PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_EED456A17.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 402aa MW: 43326 Da PI: 8.7277 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.9 | 8.5e-32 | 279 | 334 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Traes_2BL_EED456A17.1 279 KARRCWSPELHRQFVTALHQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 334 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.514 | 276 | 336 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-29 | 277 | 337 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.45E-17 | 277 | 337 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-25 | 279 | 334 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-7 | 281 | 332 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MLLLLYINVP IHPPPPSSSH PPHTFSCNKS VKIPFGEREL RCKTMGLDVG EIGMGADLSL 60 DLKMFAAKSL GRVREAPAAA MDDCIRRLEE EKSKIEVFRR ELPLCARLLA DVIDVMKKEV 120 EEKKRGGDRG EDKEDAGAGD KSNWMSTAQL WTGDSVPGDD ASEKQGERRR SSVPESRDGA 180 ALPFKAVGSG APAFAPPSLR KDDKAVGMPD LPFLSPAPIK TSLAAATGGA EESRRQLVGF 240 AQEAARAAAA LAPAAPSLSL QAQSQQTAQQ QQQQQQARKA RRCWSPELHR QFVTALHQLG 300 GPQVATPKQI RELMKVDGLT NDEVKSHLQK YRLHNRRAPG SPAANRPIVL MGGLWITQEQ 360 SSSQSGGSPP GPLNFSSSGV AASSVTVSGE EEDGRSESYG WK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-14 | 279 | 332 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-14 | 279 | 332 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-14 | 279 | 332 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-14 | 279 | 332 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951932 | 0.0 | JF951932.1 Triticum aestivum clone TaMYB49 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173713.1 | 0.0 | myb family transcription factor EFM-like | ||||
TrEMBL | A0A3B6C844 | 0.0 | A0A3B6C844_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_EED456A17.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 2e-46 | G2-like family protein |
Publications ? help Back to Top | |||
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