PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_EED456A17.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 402aa    MW: 43326 Da    PI: 8.7277
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_EED456A17.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.5e-32279334156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Traes_2BL_EED456A17.1 279 KARRCWSPELHRQFVTALHQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 334
                            68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.514276336IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-29277337IPR009057Homeodomain-like
SuperFamilySSF466896.45E-17277337IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-25279334IPR006447Myb domain, plants
PfamPF002491.7E-7281332IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MLLLLYINVP IHPPPPSSSH PPHTFSCNKS VKIPFGEREL RCKTMGLDVG EIGMGADLSL  60
DLKMFAAKSL GRVREAPAAA MDDCIRRLEE EKSKIEVFRR ELPLCARLLA DVIDVMKKEV  120
EEKKRGGDRG EDKEDAGAGD KSNWMSTAQL WTGDSVPGDD ASEKQGERRR SSVPESRDGA  180
ALPFKAVGSG APAFAPPSLR KDDKAVGMPD LPFLSPAPIK TSLAAATGGA EESRRQLVGF  240
AQEAARAAAA LAPAAPSLSL QAQSQQTAQQ QQQQQQARKA RRCWSPELHR QFVTALHQLG  300
GPQVATPKQI RELMKVDGLT NDEVKSHLQK YRLHNRRAPG SPAANRPIVL MGGLWITQEQ  360
SSSQSGGSPP GPLNFSSSGV AASSVTVSGE EEDGRSESYG WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-14279332154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14279332154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14279332154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14279332154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519320.0JF951932.1 Triticum aestivum clone TaMYB49 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173713.10.0myb family transcription factor EFM-like
TrEMBLA0A3B6C8440.0A0A3B6C844_WHEAT; Uncharacterized protein
STRINGTraes_2BL_EED456A17.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-46G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]