PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_EBA73F94F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 660aa    MW: 69652.2 Da    PI: 6.5481
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_EBA73F94F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14273332155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +   g  ++ k+++lg ++ +++Aa+a++ a++k++g
  Traes_2BL_EBA73F94F.1 273 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgKQVYLGGYDKEDKAARAYDLAALKYWG 332
                            57*******************666664478446**********99*************98 PP
2AP251.52.5e-16375426155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Traes_2BL_EBA73F94F.1 375 SKYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 426
                            89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-16273342IPR016177DNA-binding domain
CDDcd000181.56E-17273342No hitNo description
PfamPF008472.6E-11273332IPR001471AP2/ERF domain
PROSITE profilePS5103218.202274340IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-13274340IPR001471AP2/ERF domain
SMARTSM003804.3E-27274346IPR001471AP2/ERF domain
PRINTSPR003673.5E-6275286IPR001471AP2/ERF domain
CDDcd000184.02E-22375436No hitNo description
SuperFamilySSF541717.85E-18375436IPR016177DNA-binding domain
PfamPF008474.7E-10375426IPR001471AP2/ERF domain
PROSITE profilePS5103219.493376434IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-18376435IPR001471AP2/ERF domain
SMARTSM003803.7E-31376440IPR001471AP2/ERF domain
PRINTSPR003673.5E-6416436IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MASANNWLGF SLSGQGSHPQ PHQNGSPAAA AAIDVSGGGD FYGLQGQTAP DAHLGMSGLR  60
ADANYGVMDA FNGGTQETQD WAMRGLNYHG GSSELSMLVG SSGGRMTVDD GEAPKLEDFL  120
GGSSFSDVQD HAGGYLFSSG SAMGSSAAAG SHGVDGRGGS TIELSMIKTW LRNDNNQAQH  180
DQEMSADASA TSYACSGAPG STGNGVGVAS SRGQGLALSM SMGSNSHPQM PVVPAAVGTE  240
STSSENKRVD SPSAGTADAV QRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG  300
QTRKGKQVYL GGYDKEDKAA RAYDLAALKY WGTTTTTNIP ISTYEKEIEE MKHMTRQEYI  360
AYLRRNSSGF SRGASKYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFTTE EEAAEAYDIA  420
AIKFRGLNAV TNFEMSRYDV KSILEGSTLP VGGAARRLKE AAELAEAGVW RAEDGSIVSH  480
LQADAMAGYH HGWPTSIAFG SHQQQQSAAQ LALHYPYGVG GHARGWCKPE QDAVIAAAHG  540
GQDIQELHLG SGGSTHNFFQ PASRAAVYGN GGGGAWYQGL GGNAYMMPVG TVVDADQGHS  600
GSTATTEEGR LVGYGAEAGV DPYAAMRRAY ELSQGSSSVS VAKVADGYSN NWSSPFNGMG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640300.0AK364030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020P23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196244.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-134BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A3B6C9G00.0A0A3B6C9G0_WHEAT; Uncharacterized protein
STRINGTraes_2BL_EBA73F94F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-114AP2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]