PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_E82F7902D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 46880.1 Da PI: 7.5597 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.4e-05 | 327 | 364 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Traes_2BL_E82F7902D.1 327 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 364 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.227 | 315 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-10 | 325 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-7 | 325 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.48E-5 | 325 | 367 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MGDHQLMYSA PAMHNGGGGG GAVSHGMWWN TNTTAVPAAA CSTELAGFNT WPAAQLAAGG 60 GYDMAATDGG KAKSCTTTAS SESPGNNSSV TFQETASISD PAAGFTDWNS PYMSNGGAGN 120 MHGFLQVGHH DMSSRTDQQS HMNASSLMND PSPNNLDLAL QGHHHHQHQQ AGDHHRQQQL 180 LSSLGAPELL LSPNSPYGFQ SSSLLRSLLE PTAKPAPAAG IQQYQYQQMG GQAGVREPLQ 240 FTNDAAFWNP SAGFGMAMPA PAAAEQTSVR SVKRSSPAPR GANLALKSVL EGVGDSSSIV 300 TKKANSEPAF KKPRTETPSS LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHETIEY 360 IKFLHDQAGV LSAPYLKRGH HQHQVPQYLN LKSSSASPDK SCKDGSGEVS LKGRGLCLVP 420 ISSTFAVASD GPVDFWTPFG GQFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369505 | 0.0 | AK369505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092J07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190605.1 | 0.0 | transcription factor bHLH112-like isoform X1 | ||||
TrEMBL | A0A3B6CDV6 | 0.0 | A0A3B6CDV6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MRH8 | 0.0 | A0A446MRH8_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_E82F7902D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 9e-46 | bHLH family protein |
Publications ? help Back to Top | |||
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