PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_E5F50498D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 362aa    MW: 38818.9 Da    PI: 9.4791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_E5F50498D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20161210255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Traes_2BL_E5F50498D.1 161 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 210
                            7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-33160219IPR001471AP2/ERF domain
SMARTSM003804.8E-38161224IPR001471AP2/ERF domain
CDDcd000184.63E-30161219No hitNo description
SuperFamilySSF541713.4E-22161219IPR016177DNA-binding domain
PROSITE profilePS5103224.711161218IPR001471AP2/ERF domain
PfamPF008471.7E-13161210IPR001471AP2/ERF domain
PRINTSPR003671.7E-11162173IPR001471AP2/ERF domain
PRINTSPR003671.7E-11184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
LDLDPRRDER KRSGGRSTGR STKVDPRRHG KRPLPADEEE EQPPPPPSAA KHEQVEEQPY  60
HHLIGRALQQ QGAASAGGSS GADVADPSPS PEAYAQYYYS ARADHDATAM VSALSHVIRA  120
TPDQQQAYYP AGSAAVSGEQ QHQHDAAAAA AIAEEQGRKR HYRGVRQRPW GKWAAEIRDP  180
KKAARVWLGT FDTAEDAAIA YDEAALRFKG TKAKLNFPER VQGRTDLGFV VTRGIPDRLQ  240
QQQHYPATVG APAMRPPPHQ LQTVVPYPDL MRYARLLQGA GSAGGAVNLP FGAMSPPSMS  300
SSAPHILDFS TQQLIRVSPA SPAAAMSSSG TTGPSTSSST TTASSPGAAW PYTGEHKNNK  360
DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26160222467ATERF1
3gcc_A1e-26160222467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3682540.0AK368254.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2070P06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191321.11e-146ethylene-responsive transcription factor ERF113-like
TrEMBLA0A3B6C6L40.0A0A3B6C6L4_WHEAT; Uncharacterized protein
TrEMBLA0A446MC290.0A0A446MC29_TRITD; Uncharacterized protein
STRINGTraes_2BL_E5F50498D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-34related to AP2 6l
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]