PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BL_E5C380F21.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 697aa MW: 80878.3 Da PI: 8.1411

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_E5C380F21.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.5	8.1e-27	11	98	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++ +gk+++t+++ +HnH+la Traes_2BL_E5C380F21.1 11 EFYNIYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KESKCPRPETRIGCPASMTIRLTPNGKYRLTEFVPNHNHQLA 98 6******************97766.************9999.9999**********************************97 PP
2	FAR1	80.7	2.6e-25	140	225	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+ YA ++GF+vr+++++ + ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH Traes_2BL_E5C380F21.1 140 EFYSMYAGKIGFNVRRASMTVN-AENVITRRMFVCSKEGFREKKRGA-NRVKKPRPETRTGCPACMVIRLASNGKYNVTEFVTFHNHG 225 6**************99998.5566************9998.9************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-24	11	98	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.9E-21	140	225	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.1E-23	337	431	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.892	605	652	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.4E-9	605	651	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-6	627	654	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MLFDDENDAY EFYNIYAEKV GFFVRRSTLW TTSKNIITRR TFVCSREGFR EKKKGAKESK 60 CPRPETRIGC PASMTIRLTP NGKYRLTEFV PNHNHQLATA STIHMLKAKK IRRKARAVRE 120 NLVDDTVVTP EFENEDEAYE FYSMYAGKIG FNVRRASMTV NAENVITRRM FVCSKEGFRE 180 KKRGANRVKK PRPETRTGCP ACMVIRLASN GKYNVTEFVT FHNHGXXXXX XXSLTAGSYQ 240 DCGVDLYDEA LDDCYGKQNL IKDDATSNCL EGRSWKRYKC KVPHYGDVGA TLEYLQKMQH 300 DNPSFFYAVK SDEDGNLTNF LWADSKSIMD FTHFGDVVCL DSGYEVQGYG RPIALFTGLN 360 HHRQTVIFGT ALLYDESFEA FRWLFDTFKM AMNSTHPKTL LTDRSAVISE AVAVSWPETA 420 HRFCVWQIYQ NALQQLSQAF HGSRTLEYNF KRCLFDCEDE AEFLMAWREM LENHDLKDNQ 480 WLADLLAVKE KWALPYGREA FYADMKSVQQ KDNLSSELKI YLSLEFDLLS FFVQFEKLLC 540 DRRSAELQLD VSASQSTKKP PSMRILRQAA NVYTPAAYRM FEREFELYMD CMLYNCGEMG 600 TICEYRITVE DNPKDHFVKY DSLNSMSHCS CKRFEFVGIP CRHMLKVLDT RNIKDIPPQY 660 ILKRWRKDAR SGSSNGGYAY SFDGDPQTKR HTLLCRI

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MLFDDENDAY EFYNIYAEKV GFFVRRSTLW TTSKNIITRR TFVCSREGFR EKKKGAKESK  60
CPRPETRIGC PASMTIRLTP NGKYRLTEFV PNHNHQLATA STIHMLKAKK IRRKARAVRE  120
NLVDDTVVTP EFENEDEAYE FYSMYAGKIG FNVRRASMTV NAENVITRRM FVCSKEGFRE  180
KKRGANRVKK PRPETRTGCP ACMVIRLASN GKYNVTEFVT FHNHGXXXXX XXSLTAGSYQ  240
DCGVDLYDEA LDDCYGKQNL IKDDATSNCL EGRSWKRYKC KVPHYGDVGA TLEYLQKMQH  300
DNPSFFYAVK SDEDGNLTNF LWADSKSIMD FTHFGDVVCL DSGYEVQGYG RPIALFTGLN  360
HHRQTVIFGT ALLYDESFEA FRWLFDTFKM AMNSTHPKTL LTDRSAVISE AVAVSWPETA  420
HRFCVWQIYQ NALQQLSQAF HGSRTLEYNF KRCLFDCEDE AEFLMAWREM LENHDLKDNQ  480
WLADLLAVKE KWALPYGREA FYADMKSVQQ KDNLSSELKI YLSLEFDLLS FFVQFEKLLC  540
DRRSAELQLD VSASQSTKKP PSMRILRQAA NVYTPAAYRM FEREFELYMD CMLYNCGEMG  600
TICEYRITVE DNPKDHFVKY DSLNSMSHCS CKRFEFVGIP CRHMLKVLDT RNIKDIPPQY  660
ILKRWRKDAR SGSSNGGYAY SFDGDPQTKR HTLLCRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376616	0.0	AK376616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3129B22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150784.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_020150785.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A453BAG9	0.0	A0A453BAG9_AEGTS; Uncharacterized protein
STRING	Traes_2BL_E5C380F21.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]