PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_E58521BDF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 476aa    MW: 51454.3 Da    PI: 9.7199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_E58521BDF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13234285155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++++k+L+
  Traes_2BL_E58521BDF.1 234 QRMTHIAVERNRRRQMNEYLAALRSLMPES---YAHRGDQASIVGGAIDFVKELE 285
                            79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.79E-13232289No hitNo description
SuperFamilySSF474597.98E-18233310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.758233284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-11234285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14234299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10239290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
LARPLRVASD RLQRSRRYAE RKRDFGADPL ERGVVTTNGG RSNLILPTPL AQPQTAHASA  60
APLLPLPACL RSLRRFEHIA RARHTRSWRL PRPTPRGARH HYFTPSRACP SFPPPSHVSL  120
ETHAHAYSSS VAPTGSRALA PSSSIRRIGM TLDALCAASD VLVYDTFNAA AAASAAPADS  180
SLLFGDEAWM AGSASAAAPA VTAVPVEEGE KAQGRRKRRR RARSCKNRED AESQRMTHIA  240
VERNRRRQMN EYLAALRSLM PESYAHRGDQ ASIVGGAIDF VKELEQLLQS LEAQKRTLLA  300
QPEQEHKPLP IRDAMPSSST TVAAAAAATT TSTDEGKQAA ATHDTTGPPF AGFFTYPQYV  360
RLLPPRDDAD DRAGAADIEV TLVETHASVR VMAPRRPGQL LRMVAGMEAL RLTVLHLNVT  420
TLGSLALYSL SVKVEEGCGL TTADDIAAAV HHVLCLVDAE ETSQRLPAGG QQEILS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214220RRKRRRR
2215219RKRRR
3215222RKRRRRAR
4234245RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613233e-75BT061323.1 Zea mays full-length cDNA clone ZM_BFb0135D07 mRNA, complete cds.
GenBankKJ7278453e-75KJ727845.1 Zea mays clone pUT5889 bHLH transcription factor (bHLH134) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174319.11e-164transcription factor bHLH94-like
TrEMBLA0A1D5U6970.0A0A1D5U697_WHEAT; Uncharacterized protein
TrEMBLA0A446MPA90.0A0A446MPA9_TRITD; Uncharacterized protein
STRINGTraes_2BL_E58521BDF.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-58bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]