PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_E322FD546.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 955aa    MW: 105353 Da    PI: 6.17
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_E322FD546.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23149250199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F
  Traes_2BL_E322FD546.3 149 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLF 235
                            89*********************999*****9555555.49*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++ +l+v+v+r+
  Traes_2BL_E322FD546.3 236 I--RDEKSQLLVGVRRA 250
                            *..4577778*****97 PP

2Auxin_resp113.61.8e-37275357183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaas++s F+++YnPr+s+s Fvv+v++++ka +++ svGmR+ m+fete+ss+rr++Gt+vgvsd+dp+rWpnSkWr+L+
  Traes_2BL_E322FD546.3 275 AAHAASSGSSFTIYYNPRTSPSPFVVPVARYNKANYIQQSVGMRMAMMFETEESSKRRYTGTIVGVSDSDPMRWPNSKWRNLQ 357
                            79*******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-44140278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-40142263IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-21148249No hitNo description
SMARTSM010197.1E-23149251IPR003340B3 DNA binding domain
PfamPF023623.5E-21149250IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83149251IPR003340B3 DNA binding domain
PfamPF065072.9E-33275357IPR010525Auxin response factor
PfamPF023095.1E-10848938IPR033389AUX/IAA domain
PROSITE profilePS5174525.301851935IPR000270PB1 domain
SuperFamilySSF542778.34E-9869930No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MAAASQEKQQ QQLPAFGVLR NAAALLDEMQ LMGEAQGAKK VINSELWHAC AGPLVCLPQR  60
GSLVYYFPQG HSEQVAATTK KTPNSRIPNY PSLPSQLLCQ VHNITMHADK DTDEVYAQMT  120
LQPVNSETDV FPIPSLGSYA KSKHPAEYFC KNLTASDTST HGGFSVPRRA AEKLFPQLDY  180
SMQPPNQELI VRDLHDNMWT FRHIYRGQPK RHLLTTGWSL FVGAKRLKAG DSVLFIRDEK  240
SQLLVGVRRA TNQQTALSSS VLSTDSMHIG VLAAAAHAAS SGSSFTIYYN PRTSPSPFVV  300
PVARYNKANY IQQSVGMRMA MMFETEESSK RRYTGTIVGV SDSDPMRWPN SKWRNLQIEW  360
DEHGYGERPE RVSIWDIETP ENTIVFPSAS LNSKRQCLPG YGVPGLDIAS VNMSPFQRAP  420
GNPYGNLQHM PAVGSELAMM MFLNQSGQNI GTPLSCHQSS YSSIIQNVKQ NYMPPSTFGH  480
PIGSIKPESM PSNEAQQQQL HAPKMQRGNS ESCEVQPATD SVSASELHAA GREPRYTDKS  540
PSQSISEQNG KGEPRVKPRR SKKGSSHKTI SENSELSSAP SRFCDDQQHV SEAELVSCDT  600
KHVNCGNNEG SSGALTHGDF AGQLQCQQVE QNELVSPPKL ESSISPDGGK SVNSFPNQAS  660
FSQFFDGLDW MVQPPYYQDS NGIQSVSASE NIFSPSANIG STINTDTLET FQNSCLSDCF  720
PNSIQDFIGS PDLHSLTFLS PEMQNLDVHH DGSNVPSTSN SYVQMSFSED DSGSHMESIQ  780
RGMNNISSCS QPQTTEGFNL GMYSKLPSLK ESQVLSLPEI HNSSRGTSSC SMDAAEYSID  840
RSAKPLKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPASSDWK  900
LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMQVLNDC IQADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.02338031390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699300.0AK369930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160868.10.0auxin response factor 11 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A3B6CE160.0A0A3B6CE16_WHEAT; Auxin response factor
STRINGTraes_2BL_E322FD546.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]