PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_E322FD546.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 955aa MW: 105353 Da PI: 6.17 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.6 | 1.2e-23 | 149 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k lt sd++++g +++p++ ae+ ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F Traes_2BL_E322FD546.3 149 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLF 235 89*********************999*****9555555.49*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++ +l+v+v+r+ Traes_2BL_E322FD546.3 236 I--RDEKSQLLVGVRRA 250 *..4577778*****97 PP | |||||||
2 | Auxin_resp | 113.6 | 1.8e-37 | 275 | 357 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++s F+++YnPr+s+s Fvv+v++++ka +++ svGmR+ m+fete+ss+rr++Gt+vgvsd+dp+rWpnSkWr+L+ Traes_2BL_E322FD546.3 275 AAHAASSGSSFTIYYNPRTSPSPFVVPVARYNKANYIQQSVGMRMAMMFETEESSKRRYTGTIVGVSDSDPMRWPNSKWRNLQ 357 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.45E-44 | 140 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-40 | 142 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.08E-21 | 148 | 249 | No hit | No description |
SMART | SM01019 | 7.1E-23 | 149 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-21 | 149 | 250 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.83 | 149 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-33 | 275 | 357 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.1E-10 | 848 | 938 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.301 | 851 | 935 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 8.34E-9 | 869 | 930 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 955 aa Download sequence Send to blast |
MAAASQEKQQ QQLPAFGVLR NAAALLDEMQ LMGEAQGAKK VINSELWHAC AGPLVCLPQR 60 GSLVYYFPQG HSEQVAATTK KTPNSRIPNY PSLPSQLLCQ VHNITMHADK DTDEVYAQMT 120 LQPVNSETDV FPIPSLGSYA KSKHPAEYFC KNLTASDTST HGGFSVPRRA AEKLFPQLDY 180 SMQPPNQELI VRDLHDNMWT FRHIYRGQPK RHLLTTGWSL FVGAKRLKAG DSVLFIRDEK 240 SQLLVGVRRA TNQQTALSSS VLSTDSMHIG VLAAAAHAAS SGSSFTIYYN PRTSPSPFVV 300 PVARYNKANY IQQSVGMRMA MMFETEESSK RRYTGTIVGV SDSDPMRWPN SKWRNLQIEW 360 DEHGYGERPE RVSIWDIETP ENTIVFPSAS LNSKRQCLPG YGVPGLDIAS VNMSPFQRAP 420 GNPYGNLQHM PAVGSELAMM MFLNQSGQNI GTPLSCHQSS YSSIIQNVKQ NYMPPSTFGH 480 PIGSIKPESM PSNEAQQQQL HAPKMQRGNS ESCEVQPATD SVSASELHAA GREPRYTDKS 540 PSQSISEQNG KGEPRVKPRR SKKGSSHKTI SENSELSSAP SRFCDDQQHV SEAELVSCDT 600 KHVNCGNNEG SSGALTHGDF AGQLQCQQVE QNELVSPPKL ESSISPDGGK SVNSFPNQAS 660 FSQFFDGLDW MVQPPYYQDS NGIQSVSASE NIFSPSANIG STINTDTLET FQNSCLSDCF 720 PNSIQDFIGS PDLHSLTFLS PEMQNLDVHH DGSNVPSTSN SYVQMSFSED DSGSHMESIQ 780 RGMNNISSCS QPQTTEGFNL GMYSKLPSLK ESQVLSLPEI HNSSRGTSSC SMDAAEYSID 840 RSAKPLKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPASSDWK 900 LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMQVLNDC IQADQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 23 | 380 | 31 | 390 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369930 | 0.0 | AK369930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101F12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160868.1 | 0.0 | auxin response factor 11 isoform X1 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | A0A3B6CE16 | 0.0 | A0A3B6CE16_WHEAT; Auxin response factor | ||||
STRING | Traes_2BL_E322FD546.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Publications ? help Back to Top | |||
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