PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_E0978B1BC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 125aa MW: 14370.6 Da PI: 8.7073 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.8 | 3.8e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLCda++ v++fs++gk+ye + Traes_2BL_E0978B1BC.1 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVMVFSPHGKVYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 23.2 | 2.8e-09 | 77 | 125 | 4 | 51 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeL 51 ++g+s e++k e qqe+ L++ei+ Lq+ +R + Ge d++ ++l+eL Traes_2BL_E0978B1BC.1 77 AHGESSEQNKPEVIQQEVLLLRQEIDLLQKGLRYMYGEnDINHMNLNEL 125 45677899999**************************978********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 6.67E-28 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.931 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.30E-38 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 5.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.0E-7 | 81 | 125 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 7.83 | 87 | 125 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVMVFSP HGKVYELATN 60 GNMQGLIERY KGSNTEAHGE SSEQNKPEVI QQEVLLLRQE IDLLQKGLRY MYGENDINHM 120 NLNEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 1 | 93 | 1 | 91 | MEF2C |
5f28_B | 2e-15 | 1 | 93 | 1 | 91 | MEF2C |
5f28_C | 2e-15 | 1 | 93 | 1 | 91 | MEF2C |
5f28_D | 2e-15 | 1 | 93 | 1 | 91 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250031 | 0.0 | AK250031.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf65p11, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194477.1 | 4e-88 | MADS-box transcription factor 26-like | ||||
Refseq | XP_020194478.1 | 4e-88 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 3e-51 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 3e-51 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A453C1X9 | 3e-87 | A0A453C1X9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2BL_E0978B1BC.1 | 4e-88 | (Triticum aestivum) | ||||
STRING | Traes_2DL_71F120931.1 | 5e-88 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 9e-49 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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