PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_DE9A7327E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRF | ||||||||
Protein Properties | Length: 227aa MW: 24077.2 Da PI: 10.2006 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.2 | 3.5e-24 | 134 | 178 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkWRCsr v++g+k+CErH+hrgr r rk++e+ Traes_2BL_DE9A7327E.1 134 EPEPDRCRRTDGKKWRCSRGVMPGHKYCERHVHRGRGRARKPVEA 178 699***************************************985 PP | |||||||
2 | QLQ | 55.8 | 1.4e-19 | 68 | 104 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aan+PvP +L+++i+k Traes_2BL_DE9A7327E.1 68 SALTFMQRQELEHQVLIYRYFAANAPVPVHLVLPIWK 104 799*********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.9E-6 | 68 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.1E-12 | 69 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.693 | 69 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.282 | 134 | 178 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.9E-20 | 135 | 177 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MTERRQEHSP PSKLPRLSGP DADDNDGAGT VTMAAPSPLV LGLGLGVGGS SSDSGRGDAE 60 ASAATRPSAL TFMQRQELEH QVLIYRYFAA NAPVPVHLVL PIWKSVAASS SAPQRFPSLA 120 GLGSMCYDHR SSMEPEPDRC RRTDGKKWRC SRGVMPGHKY CERHVHRGRG RARKPVEAAP 180 ATSAIPIRAM HAADAQGATS AHAAPPQRLG FSSPAGVYLA HGTARAT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976393 | 1e-102 | EU976393.1 Zea mays clone 881905 growth-regulating factor mRNA, complete cds. | |||
GenBank | KJ727857 | 1e-102 | KJ727857.1 Zea mays clone pUT5948 GRF transcription factor (GRF9) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188115.1 | 1e-139 | growth-regulating factor 12-like | ||||
Refseq | XP_020197443.1 | 1e-139 | growth-regulating factor 12-like | ||||
Swissprot | Q6AWX7 | 4e-85 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A3B6CD35 | 1e-163 | A0A3B6CD35_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_DE9A7327E.1 | 1e-164 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 7e-34 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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