PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_D50CC6A1D1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 36aa MW: 3997.51 Da PI: 7.3478 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.1 | 3.6e-07 | 15 | 36 | 1 | 22 |
TSSS-HHHHHHHHHHHHHTTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg 22 +g+WT+eEd+ lv+ +++ Gg+ Traes_2BL_D50CC6A1D1.1 15 KGPWTEEEDKTLVEHIQKRGGN 36 79***************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-9 | 6 | 35 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.72E-7 | 6 | 36 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.683 | 10 | 36 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 36 aa Download sequence Send to blast |
MGRSPCCCHD AGVKKGPWTE EEDKTLVEHI QKRGGN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169251.1 | 1e-19 | myb-related protein Zm38-like | ||||
Refseq | XP_020179028.1 | 1e-19 | myb-related protein Zm38-like | ||||
TrEMBL | A0A3B6CCI0 | 9e-19 | A0A3B6CCI0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MP60 | 9e-19 | A0A446MP60_TRITD; Uncharacterized protein | ||||
STRING | EMT02284 | 2e-18 | (Aegilops tauschii) | ||||
STRING | Traes_2BL_D50CC6A1D.1 | 3e-19 | (Triticum aestivum) | ||||
STRING | Traes_2BL_D50CC6A1D1.1 | 3e-19 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-12 | myb domain protein 9 |
Publications ? help Back to Top | |||
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