PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_D4386368B.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 903aa MW: 101705 Da PI: 8.5689 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.3 | 7.8e-21 | 190 | 273 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 k+Y +YA +vGFsvrk k+ ++g +r +vCs+eg+r+++ k r+ +etrtgC a++ + ++ +gk++vt+++++HnH+ Traes_2BL_D4386368B.2 190 KYYVSYAGNVGFSVRKGLWDKTAKSG-SRSRFYVCSREGFRAKNLPK-----RPCPETRTGCPARFSIMLTPSGKYRVTEFVQDHNHQ 271 69********************8888.8999***********98877.....9*********************************** PP FAR1 89 la 90 la Traes_2BL_D4386368B.2 272 LA 273 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.7E-18 | 190 | 273 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.5E-28 | 370 | 463 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.014 | 637 | 684 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.3E-4 | 657 | 682 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.8E-4 | 659 | 686 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 903 aa Download sequence Send to blast |
MATTSGGGAA GDPAASSPAP SQPQHPTPRI SHIVRTYLDL SSNSKKRRAA RKNQLKPGGV 60 ETSAAGENKG CGPSGAASLE HSRLLRELGI RVSRYTNEER RDIITRYMQK RSGRQGVNRA 120 AAKVPSRQAL AERRRRSAGG QFLGKEDLQT ADKPEEKAEE EPELPPEVVA NAGGVPIIGM 180 VFESEEKACK YYVSYAGNVG FSVRKGLWDK TAKSGSRSRF YVCSREGFRA KNLPKRPCPE 240 TRTGCPARFS IMLTPSGKYR VTEFVQDHNH QLAGPIDIGM LKSQRLLSKV QSGNGNAISI 300 PSRYKNYLRT KSTKDMNAGD FGALTDYFRS MKSDNPSFYY AIQVDENDKA ANVFWADARS 360 IFDYHYFSDV ICFDMTYKLN DYSRPLAFIL GMNHHRQMVI FGAAFLYDET AESFKWLLET 420 FKSAMCGKQP KTILTDRSAA LKEALDLAWP GTVHRYCLWQ IYQDAAKSLA HVFCISEEFT 480 HDFSHCVFDV EDGQEFVETW NVIMEKYNLK ENKLLNELYE GRENWALPYG RQIFSGDIKS 540 MVRAETLGIR MKEYLGCEKE LSPFLKFFES SVEKRRQEEI QADYQASQRE PRTPLPLLWQ 600 AANLYTPINF ELFRKEYEEC MDCMVYGCGE FGSLSEYMIT VKNRTKEQLV RFDSSDGTVA 660 CTCKKFETAG ILCCHILKVY ELKNVKEIPP QYLLKRWSKD AKLGTVHEID GFSFDSHIGS 720 CVPERYAALC RLFYKIASKA AANVETFSMV ASQSDQLNEG IERTLQSTLA AKSSVVHSIK 780 DQLTRMAQND YPLGNSSEAQ KSTGKKMSEV THRGNCQETN KRQKQRRGHS GEAAAGPRER 840 EVNVTDQFLP DQLMQGHYVL GHNFGISTSQ NIRDDLNQFG QASAVPILQQ QPFPGNGPLT 900 ETQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248528 | 0.0 | AK248528.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51g04, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167791.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020167792.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A446MM38 | 0.0 | A0A446MM38_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_D4386368B.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-104 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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