PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_C843D1851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 33436.6 Da PI: 6.9224 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.3e-15 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv+ +++ Gg+ +W+ ++ g++R++k+c++rw +yl Traes_2BL_C843D1851.1 15 KGPWTEEEDKTLVEHIQKRGGNvgRWRGLPKAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.7e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +E+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++ Traes_2BL_C843D1851.1 70 RGNFTDDEERLIITLHAGLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.511 | 10 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-27 | 12 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-10 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-13 | 15 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 16 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.21E-8 | 17 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.39 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.22E-11 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 72 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MGRSPCCSHD AGVKKGPWTE EEDKTLVEHI QKRGGNVGRW RGLPKAAGLN RCGKSCRLRW 60 TNYLRPDIKR GNFTDDEERL IITLHAGLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHQ QLPCDQTNQH VNGAAAALLW AAAAASLGGL STGALMQAQL LQQLFQAIGS 180 NNSTTGLIAN LAAANTVLKS SSSIVPNQMN YLQPSYLCNT SNFVEQHVVQ QQLTNDTSPG 240 TSSFAAAEPA DQLCNTAASY DLAPAGDWSP AREFAGLLEP MMELPGLCSL EGDSFWKDTL 300 EESYRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-28 | 15 | 119 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679432 | 1e-130 | HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169251.1 | 0.0 | myb-related protein Zm38-like | ||||
Refseq | XP_020179028.1 | 0.0 | myb-related protein Zm38-like | ||||
TrEMBL | A0A3B6CCC5 | 0.0 | A0A3B6CCC5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MP71 | 0.0 | A0A446MP71_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_C843D1851.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-69 | myb domain protein 9 |
Publications ? help Back to Top | |||
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