PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_B69300543.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 259aa    MW: 29003.4 Da    PI: 5.0621
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_B69300543.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1960113456
                            -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Traes_2BL_B69300543.1  60 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 113
                            458**************9899********************************9 PP
2HD-ZIP_I/II124.74.2e-4058151193
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                            e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++aL++ ydal+++ e+L++e+ +L
  Traes_2BL_B69300543.1  58 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFAALRADYDALHSRVESLKQEKLAL 145
                            69******************999***************************************************************** PP

            HD-ZIP_I/II  88 reelke 93 
                            +++l+e
  Traes_2BL_B69300543.1 146 AAQLHE 151
                            **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.17E-1841117IPR009057Homeodomain-like
PROSITE profilePS5007117.84854115IPR001356Homeobox domain
SMARTSM003892.6E-1957119IPR001356Homeobox domain
CDDcd000869.11E-1859116No hitNo description
PfamPF000462.9E-1759113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-1960120IPR009057Homeodomain-like
PRINTSPR000316.4E-78695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000316.4E-795111IPR000047Helix-turn-helix motif
PfamPF021831.0E-14115156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDYHQQHQQQ HQFLMPPPAS LPAQQQQLCA PMMGIDMDMD MDEQLCFMGR GGVGRGAERK  60
RRFTEEQIRS LESMFHAHHA KLEPREKAEL ARELGLQPRQ VAIWFQNKRA RWRSKQLEHD  120
FAALRADYDA LHSRVESLKQ EKLALAAQLH ELSERLRQRD GGSGGAATAT ASSSSCNGGG  180
QELDDDKRNV VAGCVDVEPP ESCVLGGTTC ATPADVSVSV ESECDDHLHY DGAVFPESFC  240
ATPELWEPWP WPPVEWNAV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2243760.0KT224376.1 Triticum aestivum cultivar RAC875 HDZipI-5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200397.11e-145homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK04e-98HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ54e-98HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A3B6CAG00.0A0A3B6CAG0_WHEAT; Uncharacterized protein
STRINGTraes_2BL_B69300543.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-30homeobox 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]