PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_AE7EE9B5D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 206aa MW: 23132.4 Da PI: 8.2959 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.1 | 5.6e-26 | 34 | 173 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp G++F+ td el+ +L+ k+ + + ++ +i+ + +i++++P++Lp vk + +fF+k ++y g+rk+r+ Traes_2BL_AE7EE9B5D.1 34 LPIGVKFDSTDLELL-GHLEGKIGRAVshvlI--DDfipTIEMAeGICYTHPENLP-GVKLDGIASHFFHKICNAYDVGTRKRRKirs 117 699************.88****9998854432..232223555557**********.566677899******************8577 PP NAM 78 ......tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ +W++tgk++++l+++g +g kk++v+ kg a+ ekt+W+mh+y+l Traes_2BL_AE7EE9B5D.1 118 ndykvcDKNLRWHKTGKSRHILDNNGDIKGWKKIMVLRKGGAKA-EKTNWTMHQYHL 173 77666555788**************************9887766.8*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-27 | 19 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.855 | 34 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-10 | 35 | 173 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MIRNGELVPE AGMECPNCKH RIDNSDVSSQ WSGLPIGVKF DSTDLELLGH LEGKIGRAVS 60 HVLIDDFIPT IEMAEGICYT HPENLPGVKL DGIASHFFHK ICNAYDVGTR KRRKIRSNDY 120 KVCDKNLRWH KTGKSRHILD NNGDIKGWKK IMVLRKGGAK AEKTNWTMHQ YHLGVDENEM 180 YVCCTSGGAS WGPTWAVAPP AQEKFT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357763 | 0.0 | AK357763.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1061G08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161769.1 | 1e-121 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Refseq | XP_020187619.1 | 1e-121 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 2e-57 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3B6C8I7 | 1e-153 | A0A3B6C8I7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_AE7EE9B5D.1 | 1e-154 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-59 | NAC family protein |