PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_A1A475B0F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 357aa    MW: 39005.1 Da    PI: 8.6765
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_A1A475B0F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.94.1e-2392193199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+lt+sd+++ g +++p+ +ae++       ++++ +   + ++d +g ++++++iyr++++r++lt+GW++Fv++++L +gD++v
  Traes_2BL_A1A475B0F.1  92 FAKTLTQSDANNGGGFSVPRFCAETIfppldysSEPPVQ--NIFVKDVHGDEFKFRHIYRGTPRRHLLTTGWSNFVNQKKLLAGDSIV 177
                            89*********************999****986555555..6********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   +++++  +v+++r+
  Traes_2BL_A1A475B0F.1 178 FL--RSEGGDVHVGIRRA 193
                            **..4588999****997 PP
2Auxin_resp119.62.5e-39237320183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aa+ a+t+++FevvY+Prast+eF+v++  v++a++v++++GmRfkmafetedss++++ +Gtv+g++++dp+rWp+S+Wr+L+
  Traes_2BL_A1A475B0F.1 237 AARMAATGQPFEVVYYPRASTPEFCVRAGAVRAAMQVQWCPGMRFKMAFETEDSSRISWfMGTVAGIHAADPSRWPQSPWRLLQ 320
                            68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-3681195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-2987209IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-2091192No hitNo description
SMARTSM010199.8E-1992194IPR003340B3 DNA binding domain
PfamPF023624.0E-2192193IPR003340B3 DNA binding domain
PROSITE profilePS5086311.56192194IPR003340B3 DNA binding domain
PfamPF065073.7E-34237320IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MCTVPPVGAA VYYFPQGHAE QAAGAVDLSA ARVPAFLPCR VSAVRFMADP HSDEVFAKIR  60
LVPLRQGDPA VDVGDAAAEG RAQDDRPKPA SFAKTLTQSD ANNGGGFSVP RFCAETIFPP  120
LDYSSEPPVQ NIFVKDVHGD EFKFRHIYRG TPRRHLLTTG WSNFVNQKKL LAGDSIVFLR  180
SEGGDVHVGI RRAKRVFCDE GHSGWDHYRG LMRGNASSGD GGASAKGKVP AEDVVAAARM  240
AATGQPFEVV YYPRASTPEF CVRAGAVRAA MQVQWCPGMR FKMAFETEDS SRISWFMGTV  300
AGIHAADPSR WPQSPWRLLQ VRPAHSGDSL ERTSFQTINP HGNSQCHGTI WHMVPNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-70132163368Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641440.0AK364144.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164753.10.0auxin response factor 8-like
SwissprotQ01I351e-172ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK61e-172ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A3B6C9Y20.0A0A3B6C9Y2_WHEAT; Auxin response factor
STRINGTraes_2BL_A1A475B0F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-130auxin response factor 16
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]