PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_970693C1F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 247aa    MW: 26073.3 Da    PI: 4.345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_970693C1F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-182676155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g
  Traes_2BL_970693C1F.1 26 TRYLGVRRRP-WGRYAAEIRDPAT---KDRHWLGTFDTAEEAAVAYDRAARSLRG 76
                           5799******.**********843...4*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.89E-302685No hitNo description
PfamPF008478.3E-112776IPR001471AP2/ERF domain
SMARTSM003803.7E-332790IPR001471AP2/ERF domain
PROSITE profilePS5103221.5352784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-282784IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-212784IPR016177DNA-binding domain
PRINTSPR003671.7E-82839IPR001471AP2/ERF domain
PRINTSPR003671.7E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
SSSDKKSSSS KRRQQAAQQQ PDSNPTRYLG VRRRPWGRYA AEIRDPATKD RHWLGTFDTA  60
EEAAVAYDRA ARSLRGVRAR TNFAYPDLPP GSSITPYLSP DLTSDDNAVQ LLQPFYADPV  120
APLPTHQPSA GGGGQDVGSE YLYGGAPDMS SLMDDIAMPD DLPMIDGGGD MDFSMYGVGG  180
NGANASGGGG WCDASELGAY SSTPGGGHGV YFEEGYVHSP LFSPMPAADD AGADGFQLGG  240
SSSSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-182883662ATERF1
3gcc_A9e-182883662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282753e-98KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188896.11e-147ethylene-responsive transcription factor LEP-like
TrEMBLA0A3B6C6N01e-177A0A3B6C6N0_WHEAT; Uncharacterized protein
TrEMBLA0A446MC771e-177A0A446MC77_TRITD; Uncharacterized protein
STRINGTraes_2BL_5DC21F3CD.11e-178(Triticum aestivum)
STRINGTraes_2BL_E7871AFBA.11e-178(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-29ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]