PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_8FED05903.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 278aa MW: 30440.3 Da PI: 4.355 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.5e-13 | 75 | 119 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+++N+++ +Lr+++P+ +K++Ka+i + A+eYI++Lq Traes_2BL_8FED05903.1 75 ILMERDRRRKLNEKLYTLRSVVPNI-----TKMDKASIIKDAIEYIQQLQ 119 579*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.228 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-18 | 72 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.34E-15 | 73 | 123 | No hit | No description |
Pfam | PF00010 | 2.5E-11 | 74 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-16 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-17 | 75 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.543 | 200 | 276 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDPDMGENFA YYWETQRYLE SEELVDSIFV GATEDAISYY DSSSPDGSHS SSTPMGSALP 60 GAGMGMDGTG ANKNILMERD RRRKLNEKLY TLRSVVPNIT KMDKASIIKD AIEYIQQLQA 120 EERQMEAEVS ALESATGAED DYDGGLSVDQ VSSAQRKKVK RALSVSSMND ALLAAAATVA 180 SPPVEVLELR VSEVSEKVLV VSVTCSKQRD AMTKVCRALE ELRLRVITAN ITSVSGCLMH 240 TLFVEVDEMD RFQMKETVEA ALSQLDSMGS PPLSSMSY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250917 | 0.0 | AK250917.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98c12, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160196.1 | 1e-169 | transcription factor bHLH35-like | ||||
TrEMBL | A0A446MAN0 | 0.0 | A0A446MAN0_TRITD; Uncharacterized protein | ||||
TrEMBL | W5BCK3 | 0.0 | W5BCK3_WHEAT; BHLH27 | ||||
STRING | Traes_2BL_8FED05903.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-43 | bHLH family protein |
Publications ? help Back to Top | |||
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