PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_8BDCCE9F8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 480aa MW: 51767.9 Da PI: 6.3918 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.7 | 2.1e-11 | 137 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Traes_2BL_8BDCCE9F8.1 137 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 193 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 48.2 | 2.8e-15 | 236 | 287 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Traes_2BL_8BDCCE9F8.1 236 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 287 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.01E-18 | 137 | 203 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-14 | 137 | 202 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.3E-9 | 137 | 193 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-22 | 138 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.504 | 138 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-12 | 138 | 202 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-6 | 139 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-17 | 236 | 296 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.27E-23 | 236 | 296 | No hit | No description |
Pfam | PF00847 | 6.0E-10 | 236 | 287 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-33 | 237 | 301 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.256 | 237 | 295 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-18 | 237 | 295 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-6 | 277 | 297 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MDMDAAHGHY PWLNFSLAHH CEMGEEERGA AAELAAIAGA GPPPKLEDFL GGGANGNHNG 60 RNNNDAGRGD QVVSAATAEM YDSELKFLAA GFLGGATGTT APTISPAAAP QEQADPKMPA 120 PAPEQKKAVD SFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QGGYDKEEKA 180 ARAYDLAALK YWGSSTTTNF PVADYEKEVE EMKHMTRQEF VASLRRKSSG FSRGASIYRG 240 VTRHHQHGRW QARIGRVAGN KDLYLGTFST EEEAAEAYDI AAIKFRGLSA VTNFEIGRYN 300 VESIISSNLP IGNMSGGAGR GSKALESSSP EAAALPVEAP HSLAFTALPM KYDQQQQDYL 360 SFLALQHHQQ GNLQGLGYGL YSSGVNLDFA NAGPGGAMAP HCYGSNAGDL HLQQHDQQQQ 420 QHEGEGQEQQ HDQHHSMGFG ASTPMAAFSS GGPYESSVTA GSFGYYPNVA AFQTPIFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365365 | 0.0 | AK365365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033L15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186522.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-133 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A446MT42 | 0.0 | A0A446MT42_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_8BDCCE9F8.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-117 | AINTEGUMENTA-like 5 |