PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_88A78A71E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 416aa MW: 44170.2 Da PI: 9.5141 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 197.5 | 8e-61 | 41 | 414 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn......sseelaalk 82 ++lL cA av++++l+++q+l l ela+ +gd+++Rlaay ++AL+ rl ++ ++a+++ ++ e+ + +l+ Traes_2BL_88A78A71E.1 41 EQLLGPCAVAVEARNLSRVQHLFYVLGELAAFSGDANHRLAAYGLRALSLRLPAaVGPAAAAAVRVPAACESPtpsfagAEPRLFR-- 126 689999**********************************************9956677777775544443333445542222222.. PP GRAS 83 l....fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleet 161 + f+evsP++++ + +aN aI + ++ + + +H +D++is+G+QWp+Ll++L+ + + pps+R+T+v+ p + Traes_2BL_88A78A71E.1 127 AslikFHEVSPWFTLPNTLANAAISQLASAApRPLHLVDIGISHGVQWPTLLESLTRMAagRAPPSVRLTVVATPPVPfsASPPGYDF 214 13479***********************9997889********************9888667799********976557888899999 PP GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 L ++A+++++++e++ + + + L + p+Eal+V+l+++l ++ ++er+++++ vk+l+P++vv++e ++ n Traes_2BL_88A78A71E.1 215 SPHLLRYAKSIKLDLEISR----AASLDPAHGLCTTPDEALVVCLQFRLGHVT------AEERTDIIRRVKGLKPHLVVLSELDVGGN 292 9****************98....344445588999**************9997......445889*******************9987 PP GRAS 250 sesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 ++ + +f+ le + +++s++a + + e+r+ +E+e + +va + a+ + e Wr+r+++aGF++v+++ +a+++ Traes_2BL_88A78A71E.1 293 GS-AAGEFTARLELLWRFLESTHAAFKGRDgEDRRLLEAE-----AGTAVAVAAAR---EAMGREGWRDRMTAAGFEQVAFGGEAVES 371 65.5999***************888744443555555555.....66666666665...3345789********************** PP GRAS 337 aklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaWr 374 a++llrk++ +g+++ g++ l Wk++p+ ++S Wr Traes_2BL_88A78A71E.1 372 ARSLLRKYD-NGWEMSTAaaatggGGAVALRWKGQPVSFCSLWR 414 *********.5555553334666566666**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 33.381 | 14 | 389 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-58 | 41 | 414 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MVSGSGHSSS NNQRRRTEQD RPGGGKKGGG AGSDRDARWA EQLLGPCAVA VEARNLSRVQ 60 HLFYVLGELA AFSGDANHRL AAYGLRALSL RLPAAVGPAA AAAVRVPAAC ESPTPSFAGA 120 EPRLFRASLI KFHEVSPWFT LPNTLANAAI SQLASAAPRP LHLVDIGISH GVQWPTLLES 180 LTRMAAGRAP PSVRLTVVAT PPVPFSASPP GYDFSPHLLR YAKSIKLDLE ISRAASLDPA 240 HGLCTTPDEA LVVCLQFRLG HVTAEERTDI IRRVKGLKPH LVVLSELDVG GNGSAAGEFT 300 ARLELLWRFL ESTHAAFKGR DGEDRRLLEA EAGTAVAVAA AREAMGREGW RDRMTAAGFE 360 QVAFGGEAVE SARSLLRKYD NGWEMSTAAA ATGGGGAVAL RWKGQPVSFC SLWRPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 3e-30 | 36 | 415 | 29 | 420 | Protein SHORT-ROOT |
5b3h_E | 3e-30 | 36 | 415 | 29 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 29 | GGKKGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167481.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A3B6CFA1 | 0.0 | A0A3B6CFA1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_88A78A71E.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6135 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 2e-95 | GRAS family protein |
Publications ? help Back to Top | |||
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