PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_859E9B1DA.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 338aa    MW: 36361.9 Da    PI: 5.0207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_859E9B1DA.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.4e-19150201256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t  eAa+a+++a+ +++g+
  Traes_2BL_859E9B1DA.2 150 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTSVEAARAYDRAAFRMRGA 201
                            8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-32149209IPR001471AP2/ERF domain
SMARTSM003801.6E-36150214IPR001471AP2/ERF domain
PROSITE profilePS5103224.105150208IPR001471AP2/ERF domain
PfamPF008474.5E-14150200IPR001471AP2/ERF domain
CDDcd000181.15E-30150209No hitNo description
SuperFamilySSF541712.55E-22150209IPR016177DNA-binding domain
PRINTSPR003671.8E-13151162IPR001471AP2/ERF domain
PRINTSPR003671.8E-13190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDFAGEVDDF ALDLIREHLL GGDGGALATA NHDQAGPFCD DVTFPVLPPS AADPQAYQQQ  60
PMFFPQQGQP EQMQGYMDLT HQYLNSCPSA DVPEAVFRAP EPVMIQFGGE PSPVIAPSST  120
LTISVPAKGS FGXXXXXXXX XXXXXXXFRK YRGVRQRPWG KYAAEIRDPK RRGSRVWLGT  180
YDTSVEAARA YDRAAFRMRG AKAILNFPNE VGTRGAELWA PPPPAPASKT AGATNTRKRS  240
HEEDPDVEVT GVVINKAPKN EAPSPSSAQV SWDTPSSVSR ETASSTVTSA ATTPEGGFPP  300
TPSSSGLEQY WEALLGGMPL LSPLSPHPAL GFPQLTVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26149213468ATERF1
3gcc_A4e-26149213468ATERF1
5wx9_A5e-261502101474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735750.0AK373575.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035F11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178351.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3B6CB950.0A0A3B6CB95_WHEAT; Uncharacterized protein
TrEMBLA0A446MLS70.0A0A446MLS7_TRITD; Uncharacterized protein
STRINGTraes_2BL_859E9B1DA.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-32ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]