PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_75FBE2E45.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 276aa    MW: 30570.5 Da    PI: 8.2818
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_75FBE2E45.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.87.1e-09301467126
                    NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                            F+Pt + +v +yL  + + +   l + i+++d+y ++P  L +    +++++ew+fF++r++ +     ++r +  g  +  g++ ++
  Traes_2BL_75FBE2E45.1  30 FDPTPDVIVGRYLPLRRALRCDGLPRQIHDADVYGAHPGFLAAvyPPANDRSEWFFFVCRAQCQG---GRRR-AGPGAYR-LGSEARL 112
                            9***********976655555555557**************84232233556*******988653...2334.4567766.6776666 PP

                    NAM  93 lskkgelvglkktLvfy....kgrapkgektdWvmhey 126
                            l          + + +y    +  + ++++t+W m+ey
  Traes_2BL_75FBE2E45.1 113 LG----GAAYCHAFRYYedeaEVGSASTKETEWRMDEY 146
                            66....34677899***4433233345579*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-1822164IPR003441NAC domain
PROSITE profilePS5100515.54524166IPR003441NAC domain
PfamPF023651.8E-629146IPR003441NAC domain
PROSITE profilePS510058.11181276IPR003441NAC domain
SuperFamilySSF1019412.35E-7193255IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
PAPPKSGKPP RPPPRATATD AVNASPDEAF DPTPDVIVGR YLPLRRALRC DGLPRQIHDA  60
DVYGAHPGFL AAVYPPANDR SEWFFFVCRA QCQGGRRRAG PGAYRLGSEA RLLGGAAYCH  120
AFRYYEDEAE VGSASTKETE WRMDEYGDCR SAAAAFDMVV CKLYTARGGI VHTMLGVHEP  180
ASPSHRPDMN KPQVLVQLYL DSLNLGDPRR CRMHATADVF AAHPAVLTVA FPAANDRSEW  240
FFAVHRRRRE LEENDEDKAR PRRAGPGAYV LVREGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635490.0AK363549.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016J09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160473.10.0uncharacterized protein LOC109745769
TrEMBLA0A3B6C9I50.0A0A3B6C9I5_WHEAT; Uncharacterized protein
STRINGTraes_2BL_75FBE2E45.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147671819
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]