PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_6B925F45E.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 674aa    MW: 75511.1 Da    PI: 5.6448
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_6B925F45E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.9e-0878101327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C +f++ G C  Gd+C+F+Hgp
  Traes_2BL_6B925F45E.1  78 MVPCYYFQK-GNCIKGDKCPFSHGP 101
                            789******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156631.5E-71351No hitNo description
PROSITE profilePS5010311.4222551IPR000571Zinc finger, CCCH-type
SMARTSM003560.0112750IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-675101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.47475102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.59E-676100IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-677101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-479101IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MDLCSHQLII LGGNQCDFRH SEGARMNPRD CYYWLNGNCL NPKCSFRHPP IDGMFGAPTP  60
GIPAVSSHYA AYNSGKQMVP CYYFQKGNCI KGDKCPFSHG PQPAGNNPPE QVAKVSSFPL  120
EQPQTQKNDF LGVKEFAQTN HLIQQGGPII GDRSKSVNRV AANFARTAAA AIPADLASSA  180
VKSLPKSGRV KNSMPAANKS VGTSSGEDHP ECYQNNLPVE TDPMQDWSQP YQTPPQDDMP  240
EDSRDADDLL GESSPGFDVL VANDADAGAY MHDPDDFGRD IYPVEDYEYA PADFEIQSHH  300
ERELFNGMGE QGPIGQMYDG YDRKRRRTSS ERNLDRPSYS ERRSRQRDTG PVEIDGSDLR  360
HRLRRRKING SPGVSPERSG ESRRRDDRYR ERAYDGHRTH RDRHQGPRGS TLSSRLQGRI  420
KLPGRSPDRV DARSERERDR RQLRDRLSPV MPMDIQGGRH REAGHHQERI RQRSSERASS  480
ARIADGKHSR RNVTDSLNFA SRKDFGPESR KANGSVQSEA SLDFEGPTPL SVILQRKRQA  540
ASGNGNGSSA HNVKEDKSAV VSHRQAQSPA EAEKEGYDNT ISSEEYKSRS GDEEYKEEGQ  600
VPASSSHGDK AEAEDMIEVE NQEADNYEQR QGESEYEATE GYEYKSEDEN AYQDDEEEFE  660
DDDDFARKVG VVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322326RKRRR
2322327RKRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757340.0AK375734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3102P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191143.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A446MW030.0A0A446MW03_TRITD; Uncharacterized protein
STRINGTraes_2BL_6B925F45E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]