PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_6B925F45E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 674aa MW: 75511.1 Da PI: 5.6448 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.9e-08 | 78 | 101 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f++ G C Gd+C+F+Hgp Traes_2BL_6B925F45E.1 78 MVPCYYFQK-GNCIKGDKCPFSHGP 101 789******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15663 | 1.5E-7 | 13 | 51 | No hit | No description |
PROSITE profile | PS50103 | 11.422 | 25 | 51 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 27 | 50 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 75 | 101 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.474 | 75 | 102 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.59E-6 | 76 | 100 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-6 | 77 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 79 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MDLCSHQLII LGGNQCDFRH SEGARMNPRD CYYWLNGNCL NPKCSFRHPP IDGMFGAPTP 60 GIPAVSSHYA AYNSGKQMVP CYYFQKGNCI KGDKCPFSHG PQPAGNNPPE QVAKVSSFPL 120 EQPQTQKNDF LGVKEFAQTN HLIQQGGPII GDRSKSVNRV AANFARTAAA AIPADLASSA 180 VKSLPKSGRV KNSMPAANKS VGTSSGEDHP ECYQNNLPVE TDPMQDWSQP YQTPPQDDMP 240 EDSRDADDLL GESSPGFDVL VANDADAGAY MHDPDDFGRD IYPVEDYEYA PADFEIQSHH 300 ERELFNGMGE QGPIGQMYDG YDRKRRRTSS ERNLDRPSYS ERRSRQRDTG PVEIDGSDLR 360 HRLRRRKING SPGVSPERSG ESRRRDDRYR ERAYDGHRTH RDRHQGPRGS TLSSRLQGRI 420 KLPGRSPDRV DARSERERDR RQLRDRLSPV MPMDIQGGRH REAGHHQERI RQRSSERASS 480 ARIADGKHSR RNVTDSLNFA SRKDFGPESR KANGSVQSEA SLDFEGPTPL SVILQRKRQA 540 ASGNGNGSSA HNVKEDKSAV VSHRQAQSPA EAEKEGYDNT ISSEEYKSRS GDEEYKEEGQ 600 VPASSSHGDK AEAEDMIEVE NQEADNYEQR QGESEYEATE GYEYKSEDEN AYQDDEEEFE 660 DDDDFARKVG VVFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 322 | 326 | RKRRR |
2 | 322 | 327 | RKRRRT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375734 | 0.0 | AK375734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3102P07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191143.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q0J952 | 0.0 | C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A446MW03 | 0.0 | A0A446MW03_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_6B925F45E.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6604 | 32 | 41 |
Publications ? help Back to Top | |||
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