PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_5EFA85F52.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 455aa    MW: 48919.9 Da    PI: 7.7416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_5EFA85F52.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-082212551956
                    AP2  19 IrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            Ir p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Traes_2BL_5EFA85F52.1 221 IRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 255
                            555533...59*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.737178262IPR001471AP2/ERF domain
SMARTSM003803.4E-14221268IPR001471AP2/ERF domain
CDDcd000182.41E-18221263No hitNo description
Gene3DG3DSA:3.30.730.101.7E-18221263IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-13221264IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDASSASGES GSGGGRGTGR RWKGKGVTPI QARRQQQLAP VFEDASAALL RPLRKIGRSP  60
DRLHRTTSSL STSSSSAPAS PRSFPASDAV APSARHIFPF AYEPSATTAR ESPQLLRQYS  120
SMSQPASPPP QQQPLRHQQM ISFGGSPPCA TQSFFMPVES AQQQQHLLRY WSEALNLSPR  180
GGLAGMPPSL YQQLLRAPPP PQKLXXXXXX XXXXXXXXXX IRLPRNRTRL WLGTFDTAED  240
AAMAYDREAF KLRGENARLN FPDRFLGKGR AGGSGRTSAA SSAATSAAAG TASCSSSSSS  300
PPQTSDEAAA NTQQAPRQRE QEHAEWSMLE NQPQHPPPTT IPQDGGSRDA ATPYSAEMFH  360
SSAQSGGMWA QADESWFNTW GPGSSFWDYE MDDSARSLFI HHPRFSGEDA GMSHPGAQET  420
PPATAAAGTS DTTCDDVPVT SSSPPPEAHQ APNFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679870.0AK367987.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065O24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146908.10.0uncharacterized protein LOC109732119
TrEMBLA0A3B6C9U90.0A0A3B6C9U9_WHEAT; Uncharacterized protein
TrEMBLA0A446MIL70.0A0A446MIL7_TRITD; Uncharacterized protein
STRINGTraes_2BL_5EFA85F52.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.12e-22ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]