PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_5DC21F3CD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 262aa    MW: 27707 Da    PI: 4.345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_5DC21F3CD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-184191155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g
  Traes_2BL_5DC21F3CD.1 41 TRYLGVRRRP-WGRYAAEIRDPAT---KDRHWLGTFDTAEEAAVAYDRAARSLRG 91
                           5799******.**********843...4*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.91E-3041100No hitNo description
SuperFamilySSF541717.19E-214299IPR016177DNA-binding domain
SMARTSM003803.7E-3342105IPR001471AP2/ERF domain
PfamPF008479.2E-114291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-284299IPR001471AP2/ERF domain
PROSITE profilePS5103221.5354299IPR001471AP2/ERF domain
PRINTSPR003671.9E-84354IPR001471AP2/ERF domain
PRINTSPR003671.9E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSSSSSDK KSSSSKRRQQ AAQQQPDSNP TRYLGVRRRP WGRYAAEIRD  60
PATKDRHWLG TFDTAEEAAV AYDRAARSLR GVRARTNFAY PDLPPGSSIT PYLSPDLTSD  120
DNAVQLLQPF YADPVAPLPT HQPSAGGGGQ DVGSEYLYGG APDMSSLMDD IAMPDDLPMI  180
DGGGDMDFSM YGVGGNGANA SGGGGWCDAS ELGAYSSTPG GGHGVYFEEG YVHSPLFSPM  240
PAADDAGADG FQLGGSSSSY YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-184398359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282753e-98KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188896.11e-147ethylene-responsive transcription factor LEP-like
TrEMBLA0A3B6C6N00.0A0A3B6C6N0_WHEAT; Uncharacterized protein
TrEMBLA0A446MC770.0A0A446MC77_TRITD; Uncharacterized protein
STRINGTraes_2BL_5DC21F3CD.10.0(Triticum aestivum)
STRINGTraes_2BL_E7871AFBA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-31ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]