PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_58A855C7B.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 612aa    MW: 63565.6 Da    PI: 8.5636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_58A855C7B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0594116123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C+k F r  nL+ H r H
  Traes_2BL_58A855C7B.2  94 FVCEVCNKGFQREQNLQLHRRGH 116
                            89*******************88 PP
2zf-C2H211.50.0009171193123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k++  +s+ k H + +
  Traes_2BL_58A855C7B.2 171 WKCDKCSKRYAVQSDWKAHSKIC 193
                            58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.52E-793116No hitNo description
Gene3DG3DSA:3.30.160.608.5E-693116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.0E-594116IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09494116IPR007087Zinc finger, C2H2
SMARTSM003550.004194116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4159192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.52E-7166191No hitNo description
SMARTSM00355140171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGMRDGD QQDQLKPLIS QQQQQHQQQL AAVALSGVGS AAPAASSQGA  60
PAAAPPAKKK RTLPDPDAEV IALSPKTLMA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW  120
KLKQKNPNQV QRRRVYLCPE PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY  180
AVQSDWKAHS KICGTREYRC DCGTLFSRRD SFITHRAFCD ALAQESARLP PTSLSSLTSH  240
LYGATNAGNM ALSLSQVGSH LNSTLQHDGH HHHPSPELLR LGGAAGGGSS SIAARLDHLL  300
SPSGASAFRP PQQQPQSAFF LNAAPGQDFG DDAGNGPQSY LQSKPFHGLM QLPDLQGNGA  360
GGPASSGHGL FNLGFFSNNG NSSGSSHEHA SQGMMSNDQF SGGAGGGGGG GSEVSAAAIF  420
GGNFVGGDHI SQAGMYNDQA PMLPQMSATA LLQKAAQMGA TSSPNGAASM FRGFVGSSPH  480
ARQGTPQQQM DQNDANLNEL MNSLAAGGGV NAAAMFGGAN GGPAGMFDPR MCDMDQHEVK  540
FSQGGGGVGG NGGGAGGGAG GDMTRDFLGV GGGGIVRGIS TPRGDHHQSS SDMSSLEAEM  600
KSASSFNGGR MP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34167233369Zinc finger protein JACKDAW
5b3h_F3e-34167233369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400411SGGAGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743080.0AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197691.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_020197692.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_020197693.10.0protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A3B6CAW80.0A0A3B6CAW8_WHEAT; Uncharacterized protein
STRINGTraes_2BL_58A855C7B.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]