PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_560CCE975.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 35527 Da PI: 6.0788 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.2e-17 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv+ +k++Gg+ +W+ ++ g++R++k+c++rw +yl Traes_2BL_560CCE975.1 15 KGPWTEEEDKTLVEHIKKHGGKvgSWRGLPKSAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++ Traes_2BL_560CCE975.1 70 RGNFTDEEERLIITLHAGLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.432 | 10 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.93E-28 | 12 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 15 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 16 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.30E-10 | 17 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.98 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-26 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-11 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGRSPCCCRD ADVKKGPWTE EEDKTLVEHI KKHGGKVGSW RGLPKSAGLN RCGKSCRLRW 60 TNYLRPDIKR GNFTDEEERL IITLHAGLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHQ QLPPDQSHRH LNATSIAHLP EALLWATAAA SLSSLDTGVL MQAQLLQQLI 180 PAIGSNYGTS GLIANLAAAN AMQNSSGSMV PNLLLEDQMN CLQPGYLCNT SNFAEQHVVQ 240 EQLTNDTSPG TSSFAAAEQA DELCNTAASF ASHHVAPVGD SAGDWSPAQE FAGLLEPMME 300 LPDLRSLESD SFWKEILEDS YRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-28 | 10 | 119 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156904 | 1e-127 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). | |||
GenBank | BT054398 | 1e-127 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. | |||
GenBank | HQ858691 | 1e-127 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169252.1 | 0.0 | transcription factor MYB34-like | ||||
Swissprot | Q9S9Z2 | 4e-65 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A3B6CET6 | 0.0 | A0A3B6CET6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_560CCE975.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 3e-70 | myb domain protein 9 |
Publications ? help Back to Top | |||
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