PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_4E0157603.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 38075.5 Da PI: 4.7416 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.4 | 9e-30 | 38 | 181 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd el+ e+L+ kv g ++ + +i+e+ +i++++P++Lp +k + + +fF+k +++y gkrk+r+ Traes_2BL_4E0157603.2 38 LPAGVKFDPTDLELL-EHLEGKVGGAAshvlID--DfipTIEEAqGICYTHPENLP-GIKMDGSTGHFFHKVSNAYVVGKRKRRKisn 121 799************.99*******99555422..13334888878**********.666778899******************8677 PP NAM 78 ......tksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 ++ +W++tgk++++l+++g +g kk+Lv+y ++ k+ekt+W mh+y+l Traes_2BL_4E0157603.2 122 sdhtvcDENLRWHKTGKSRSILDNNGVIKGWKKILVLYigyRKGGGKTEKTNWRMHQYHL 181 77766545788***************************65544555668*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-32 | 23 | 200 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.689 | 38 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-13 | 39 | 181 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MIIHPSLCQS EELLAWMECP NCKYRIDNTD VLSQWPGLPA GVKFDPTDLE LLEHLEGKVG 60 GAASHVLIDD FIPTIEEAQG ICYTHPENLP GIKMDGSTGH FFHKVSNAYV VGKRKRRKIS 120 NSDHTVCDEN LRWHKTGKSR SILDNNGVIK GWKKILVLYI GYRKGGGKTE KTNWRMHQYH 180 LGVDQDEKQE ELVVSKVFYQ VQSMNAGPSA DSLPLQTRRP NGSPSGTEQN QEEGQSGMST 240 VREAVEWLAG SSSHAVEDAP LSGLDEHLSS DGTPDAAYPV GQPLPLDASE ALQGFADLGA 300 PPDVSLPPHT QFGRQDSMEM WLVSVLTEDE GVFEAAEQQE EAGFSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 117 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357763 | 1e-170 | AK357763.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1061G08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187618.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 9e-66 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3B6CB10 | 0.0 | A0A3B6CB10_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MFX4 | 0.0 | A0A446MFX4_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_4E0157603.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 9e-68 | NAC family protein |