PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_46E59998A1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 631aa MW: 66265.7 Da PI: 6.7939 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 296.2 | 8.6e-91 | 264 | 631 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 ++lL e+A a+++g+le a a La+l+ a+p+gd+ qRl+a+++ AL++r+a ++ ++++ ++ +e+ + +l+++++ Traes_2BL_46E59998A1.1 264 RQLLSEAAAAIADGNLETAAANLATLKRAANPRGDAEQRLVAVMVAALSSRIAP-----TASASSQQLADLCGAEHHTGSQLLHDIT 345 689**************************************************9.....444555666655689999999******* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAee 171 P+++++ +aN aI+eav+g++ +H +Dfdi+ + Q +aL+q La+R+ + l++T+v +p+s + +l +gerL+k+Ae Traes_2BL_46E59998A1.1 346 PCFRLALDAANIAIVEAVAGHRVIHLVDFDINAP-QHAALIQRLADRRVPGTCLQVTAVTDPTSPftqsLAATLPGVGERLKKLAEL 431 *******************************987.99************************9988777667788899********** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258 g++ +f++ ++ r ++e ++L ++pgEalaVnl+++l +++desvs +++rde+L+ v+ l P+vv++veqe++ n++++++rf+ Traes_2BL_46E59998A1.1 432 AGIEYHFRM-ISCRAVEIEASKLGCEPGEALAVNLAFALSHVPDESVSPANPRDELLRRVRALGPQVVTLVEQELNSNTAPLATRFS 517 *********.577889999******************************************************************** PP GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345 +a +y a++d+l+++++r+s +r+ E++ +++ n+v ega+r er+e ++kWr+r+++aGF+pv+l +a+q+ + + Traes_2BL_46E59998A1.1 518 DAYLHYGAILDALDSTVSRDSADRARAEEA-VANMSANAVGREGADRLERCEVFGKWRARFGMAGFRPVALAAGIADQVMARAGAPP 603 ******************************.778889******************************************99998888 PP GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374 g v+ e+g l lgWk+r + ++SaWr Traes_2BL_46E59998A1.1 604 -PGLVVKPENGVLRLGWKQRVVAVASAWR 631 .9**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.381 | 237 | 612 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-88 | 264 | 631 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MEPGGPWRDP RQGYIYGLGS PMQMPAQQRS DPAAAGGVLK RSLGELERWQ HQRQFAMQQE 60 LYLRAVRQRT AATSPAVSPL TSADIAAVLG GVPAQPFFSG SSLGGGLASP SSTLSSLTTA 120 SRAAMPLIQH HVHRQTPLVP SSAHAQTQAQ AHALAVARVP APSAVGSELS ILQDLEKQLL 180 GDDDEAEPAM SGTGSTVTSS EWEETIQRLN SITAASSPPL YAEATPNNKN NYSAAMTGSP 240 SNSSTSTASS SASCSPPISA TTSRQLLSEA AAAIADGNLE TAAANLATLK RAANPRGDAE 300 QRLVAVMVAA LSSRIAPTAS ASSQQLADLC GAEHHTGSQL LHDITPCFRL ALDAANIAIV 360 EAVAGHRVIH LVDFDINAPQ HAALIQRLAD RRVPGTCLQV TAVTDPTSPF TQSLAATLPG 420 VGERLKKLAE LAGIEYHFRM ISCRAVEIEA SKLGCEPGEA LAVNLAFALS HVPDESVSPA 480 NPRDELLRRV RALGPQVVTL VEQELNSNTA PLATRFSDAY LHYGAILDAL DSTVSRDSAD 540 RARAEEAVAN MSANAVGREG ADRLERCEVF GKWRARFGMA GFRPVALAAG IADQVMARAG 600 APPPGLVVKP ENGVLRLGWK QRVVAVASAW R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-40 | 259 | 631 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196221.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A3B6CAH4 | 0.0 | A0A3B6CAH4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MK69 | 0.0 | A0A446MK69_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_46E59998A1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4188 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 2e-81 | SCARECROW-like 8 |
Publications ? help Back to Top | |||
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