PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_439C794F5.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 409aa MW: 43700.7 Da PI: 6.4453 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 93.4 | 1.6e-29 | 105 | 193 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + Traes_2BL_439C794F5.3 105 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRGGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCR 192 89***************************955556888************************************************85 PP - CS B3 85 d 85 Traes_2BL_439C794F5.3 193 G 193 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.4E-41 | 97 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.66E-29 | 101 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.27E-25 | 103 | 190 | No hit | No description |
PROSITE profile | PS50863 | 13.733 | 105 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-26 | 105 | 208 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-21 | 105 | 210 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MEFTAASSSS RLSKEGEEEE EMEEEEEEGD EASPREIPFM TAMTAAASSS SPTSAASPSS 60 AAASACASGS GSPFRSSDGA GASGSGAGGG AGGGDVEVID KEHMFDKVVT PSDVGKLNRL 120 VIPKQHAEKY FPLDAAANEK GLLLSFEDRG GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK 180 RLDAGDTVSF CRGAAEATRD RLFIDWKRRA ELRDPHRLAR LPMPMPTSSP YGPWGAGPGG 240 FFMPPAPPAT LYEHHRLRQS FDFRSISPAA PQRPQVLYFG SAGIFPHATM PPPQPQPPLH 300 IAVQPSPAVT VGMPMVLDST PLVNSPTAAA KRVRLFGVNL DNPHTHGGES SNDANALSLR 360 MPGWQRPTPF RSLELPQHGA AGAESSAASS PSSSSSSKRE AHSSLDLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-60 | 100 | 209 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-60 | 100 | 209 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374546 | 0.0 | AK374546.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068K15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174582.1 | 0.0 | B3 domain-containing protein Os02g0683500-like | ||||
Swissprot | Q6EU30 | 1e-132 | Y2835_ORYSJ; B3 domain-containing protein Os02g0683500 | ||||
TrEMBL | A0A3B6CAP4 | 0.0 | A0A3B6CAP4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MK52 | 0.0 | A0A446MK52_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_439C794F5.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-64 | B3 family protein |
Publications ? help Back to Top | |||
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