PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_419CEED791.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 196aa    MW: 21615 Da    PI: 10.1048
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_419CEED791.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-1958111356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k++++t+eq e Le  F+++r++ + ++  LA++lgL+ +qV vWFqNrRa++k
  Traes_2BL_419CEED791.1  58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQNRRARHK 111
                             45689***********************************************99 PP
2HD-ZIP_I/II109.81.9e-3558149293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             kkrrl++eq+++LE sF+ee+kLe+ rKv la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da   ++++L+++v +L+
  Traes_2BL_419CEED791.1  58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQNRRARHKSKTLEQEFTRLKHAHDADILHKCHLQNQVLRLK 144
                             9************************************************************************************** PP

             HD-ZIP_I/II  89 eelke 93 
                             e+l++
  Traes_2BL_419CEED791.1 145 ERLRA 149
                             99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.39E-1749113IPR009057Homeodomain-like
PROSITE profilePS5007115.9253113IPR001356Homeobox domain
SMARTSM003894.2E-1656117IPR001356Homeobox domain
CDDcd000861.19E-1358113No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1758111IPR009057Homeodomain-like
PfamPF000463.3E-1658111IPR001356Homeobox domain
PRINTSPR000312.2E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000312.2E-593109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDNQQLFGSS YVDAPFFAAN GTAQRESQPK ARRRRRKAAR CGGGDGNGGE MDGGGDPKKR  60
RLTDEQAEML ELSFREERKL ETGRKVYLAA ELGLDPKQVA VWFQNRRARH KSKTLEQEFT  120
RLKHAHDADI LHKCHLQNQV LRLKERLRAT EEEVQRLRSA AGSHGASGDG GDAAGAVSVC  180
GGSPGSSFST GTWQQH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2597830.0AB259783.1 Hordeum vulgare subsp. vulgare Vrs1 mRNA for homeodomain leucine zipper protein Vrs1, complete cds, allele: Vrs1.b.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176255.11e-110homeobox-leucine zipper protein HOX14-like
SwissprotA2YN171e-73HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
SwissprotQ7XI851e-73HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A3B6CA761e-140A0A3B6CA76_WHEAT; Uncharacterized protein
STRINGTraes_2BL_419CEED79.11e-142(Triticum aestivum)
STRINGTraes_2BL_419CEED791.11e-142(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-37homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]