PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_419CEED79.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 196aa MW: 21615 Da PI: 10.1048 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 8.9e-19 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq e Le F+++r++ + ++ LA++lgL+ +qV vWFqNrRa++k Traes_2BL_419CEED79.1 58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQNRRARHK 111 45689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 109.8 | 1.9e-35 | 58 | 149 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrl++eq+++LE sF+ee+kLe+ rKv la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++L+++v +L+e Traes_2BL_419CEED79.1 58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQNRRARHKSKTLEQEFTRLKHAHDADILHKCHLQNQVLRLKE 145 9**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 +l++ Traes_2BL_419CEED79.1 146 RLRA 149 9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.39E-17 | 49 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.92 | 53 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-16 | 56 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.19E-13 | 58 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-17 | 58 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.3E-16 | 58 | 111 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.2E-5 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.2E-5 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MDNQQLFGSS YVDAPFFAAN GTAQRESQPK ARRRRRKAAR CGGGDGNGGE MDGGGDPKKR 60 RLTDEQAEML ELSFREERKL ETGRKVYLAA ELGLDPKQVA VWFQNRRARH KSKTLEQEFT 120 RLKHAHDADI LHKCHLQNQV LRLKERLRAT EEEVQRLRSA AGSHGASGDG GDAAGAVSVC 180 GGSPGSSFST GTWQQH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB259783 | 0.0 | AB259783.1 Hordeum vulgare subsp. vulgare Vrs1 mRNA for homeodomain leucine zipper protein Vrs1, complete cds, allele: Vrs1.b. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176255.1 | 1e-110 | homeobox-leucine zipper protein HOX14-like | ||||
Swissprot | A2YN17 | 1e-73 | HOX14_ORYSI; Homeobox-leucine zipper protein HOX14 | ||||
Swissprot | Q7XI85 | 1e-73 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A3B6CA76 | 1e-140 | A0A3B6CA76_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_419CEED79.1 | 1e-142 | (Triticum aestivum) | ||||
STRING | Traes_2BL_419CEED791.1 | 1e-142 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-37 | homeobox protein 40 |
Publications ? help Back to Top | |||
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