PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_36A3AB3A2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 551aa MW: 59217.6 Da PI: 10.5416 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.6 | 2.6e-39 | 186 | 324 | 3 | 131 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec...eaesssssa 82 g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk++eWL+++a +ai++l+++ ++ +as++ +++ss a Traes_2BL_36A3AB3A2.1 186 GGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAVEWLIKAAAAAIDKLPELdaaafPNHPASASasaNKQSSALHA 273 78*************************************************************8888833333333323333333333 PP TCP 83 s.nsssgkaaksaakskksqksaasalnlak.esrakarararertrekmr 131 + +s++++ + + +s+ s++s+ s+l+l++ +sr kar+rar+r+++ + Traes_2BL_36A3AB3A2.1 274 EaDDSQPQQLTRSGCSSTSETSKGSVLSLSRsDSRVKARERARDRSASVKD 324 31344448888888******************************9887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.7E-40 | 186 | 322 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.112 | 187 | 245 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.504 | 305 | 325 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
NGTPLPPRSA HLPPPPLPLS LSLGLIKSGD LFLPPSIVSS RLVLLTLHLP SLPLPPSLAA 60 PCSLHSIPSP QGAHGIARRS APPIPRARFP LPASPRRPGW LNFATNALWV GHERHWRRLA 120 GGPIHTRMEL SVAAAAVELG KRGRPDDQYQ EQDQDHGDAK RLALVPWPPH QQHPSSRIYR 180 VSRGSGGKDR HSKVYTAKGI RDRRVRLSVA TAIQFYDLQD RLGYDQPSKA VEWLIKAAAA 240 AIDKLPELDA AAFPNHPASA SASANKQSSA LHAEADDSQP QQLTRSGCSS TSETSKGSVL 300 SLSRSDSRVK ARERARDRSA SVKDKDDSVT AAVHRRPPSA QAASFTELLT GLAAATPAVA 360 QHKQHNSWQQ MTASATADYL GFAQPRKSGH GMLHTFASPA PHLGNIAPVS MAPAQHFSLS 420 AGGGDSQTEM PHFSFSQDHY MPVHAAPASG PAVDYSLNFS MSSGLVGVNN TRGTLQSNSQ 480 PHLSGHHHHH HHHQQLQRLS TPLDAPHIPF LFSPAVAVAS PTTAESHFGA AAALQLWEGF 540 RHSDMKEKGK N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-26 | 192 | 246 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-26 | 192 | 246 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370348 | 0.0 | AK370348.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109C05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165443.1 | 0.0 | transcription factor PCF6-like | ||||
TrEMBL | A0A3B6AYU1 | 0.0 | A0A3B6AYU1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446KZ32 | 0.0 | A0A446KZ32_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_36A3AB3A2.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 6e-38 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
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