PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_316A467DE.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 375aa MW: 41629.8 Da PI: 5.0793 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.2 | 3e-27 | 73 | 212 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp G++F+Ptd +l+ +L+ k+ + + ++++i++++ i++++P++Lp vk++ + +fF+k ++y g+rk+r+ Traes_2BL_316A467DE.2 73 LPTGVKFDPTDLQLL-GHLEGKIGRAVshVLIDDFIPTIEmpegICYTHPENLP-GVKSDGTASHFFHKICNAYDVGTRKRRKisnsd 158 699************.88****9998844223344555533344**********.77889999*******************867777 PP NAM 78 ....tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +W++tgk++++l+++g +g kk++v+ kg a+ ekt+W+mh+y+l Traes_2BL_316A467DE.2 159 cnvcDEHLRWHKTGKSRHILDNNGDIKGWKKIMVLRKGGAKA-EKTNWTMHQYHL 212 776555778**************************9887766.8*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-31 | 58 | 231 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.095 | 73 | 231 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-11 | 74 | 212 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MLVRSLLAHH SAPTVADLRR RSRAPMEEPF IVTGKIIAMM VRNGELLPEA GMECPKCEHR 60 IDNSDVSSQW PGLPTGVKFD PTDLQLLGHL EGKIGRAVSH VLIDDFIPTI EMPEGICYTH 120 PENLPGVKSD GTASHFFHKI CNAYDVGTRK RRKISNSDCN VCDEHLRWHK TGKSRHILDN 180 NGDIKGWKKI MVLRKGGAKA EKTNWTMHQY HLGVDENEKD GELVVCKVFF QLPSEKAGQS 240 VMFAVNEESD SFAVKIDPTT PMTYPPQPPR PDSSPFETEQ NQEDEEFRLS AVRGAAEWLA 300 GTSSYAVDDA ALPGLDEHPS RSGTPDAAYP EKQHLPLVDT DALQDFPEPG TPPDFSALAD 360 LPIGSLDSFT WLDQE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357763 | 0.0 | AK357763.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1061G08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161769.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Refseq | XP_020187619.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 5e-69 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3B6C8N4 | 0.0 | A0A3B6C8N4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MFY1 | 0.0 | A0A446MFY1_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_316A467DE.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 4e-69 | NAC family protein |