PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_2ECC216F7.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 889aa MW: 100857 Da PI: 8.6562 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.5 | 4.1e-22 | 68 | 158 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY+++A++vGF vr+ ++k ++ + +++++Cs +g+r+e+ k+ + +++r+r++tr+gC+a++ vk+ + ++++++++ ++Hn Traes_2BL_2ECC216F7.2 68 FYKSFAHRVGFGVRVGQQKVV--DNVVESKRYMCSSQGFRSEKGKRnvkAANKKRKREVTRCGCDAHIYVKRCSGNTYKIHSMIEQHN 153 9***************99888..889****************9999787788999********************************* PP FAR1 87 Helap 91 H ++p Traes_2BL_2ECC216F7.2 154 HGFVP 158 *9875 PP | |||||||
2 | FAR1 | 72.3 | 1.1e-22 | 201 | 291 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY++YA+++GF+vr+ ++k +++ + ++f+Cs+eg+r+++ ++ +ek++r+ ++tr+gC+a+++v+ + ++++v++l ++Hn Traes_2BL_2ECC216F7.2 201 EFYKSYARHCGFKVRVGQHKLL-NKEVVQFKRFMCSREGFRSDKGEDpsNEKKKRNVKVTRCGCNAHIVVRWCSGNTYKVSSLIEHHN 287 6****************99887.777799**************99998889999999******************************* PP FAR1 87 Hela 90 H l+ Traes_2BL_2ECC216F7.2 288 HGLV 291 *997 PP | |||||||
3 | FAR1 | 71.1 | 2.5e-22 | 339 | 430 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA+++GFsvr+ + k +n+ + +++f+Cs+eg+r+e+ +++r+ r++tr+gC+a++ vk+ +d+k+++t+ ++H Traes_2BL_2ECC216F7.2 339 EFYKSYAHHCGFSVRVGQRKLL-NNEVVQWKRFMCSREGFRSEKCMGvddPSRKRKVRKVTRCGCDARIIVKRCTDNKYKITSWIEHH 425 6****************97766.8999****************9887777889999******************************** PP FAR1 86 nHela 90 nH ++ Traes_2BL_2ECC216F7.2 426 NHGFV 430 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-19 | 68 | 158 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 3.8E-20 | 201 | 291 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 5.9E-20 | 339 | 430 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.0E-22 | 551 | 640 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.965 | 820 | 869 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.3E-5 | 822 | 861 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.6E-5 | 844 | 871 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 889 aa Download sequence Send to blast |
MESVTIVQAQ PFAGINSPLL LDEGRPGTPD RDTTSMPQPC STSTSECADE SKPALGMTFE 60 GLEAVEAFYK SFAHRVGFGV RVGQQKVVDN VVESKRYMCS SQGFRSEKGK RNVKAANKKR 120 KREVTRCGCD AHIYVKRCSG NTYKIHSMIE QHNHGFVPPD KLHLIRSNRG ASEKEKVIPD 180 CDEALRPSIG MAFEGLSSAE EFYKSYARHC GFKVRVGQHK LLNKEVVQFK RFMCSREGFR 240 SDKGEDPSNE KKKRNVKVTR CGCNAHIVVR WCSGNTYKVS SLIEHHNHGL VSPDKVTKSK 300 RRVSEKAKNK LSSSLVPECD EAMKPSVGMV FEDIGSVEEF YKSYAHHCGF SVRVGQRKLL 360 NNEVVQWKRF MCSREGFRSE KCMGVDDPSR KRKVRKVTRC GCDARIIVKR CTDNKYKITS 420 WIEHHNHGFV SPDKCHLIRS NRQLSDKAKP TVSTHCKAST CTSQANQPDH VSEGRSDNVG 480 CTKRDLQKYH HDLCSKIKNE DAQIFVAQLC RKQQEDSAFF FDCDVDDQGM LVHVFWADAT 540 SRKNYIYFSD ILTFDSTNTM NQHGMIFAPF TGTNHHLQSV SFGAAFLADE KIESYAWLFQ 600 TFLRAMGGVS PKTIVTRENN RMKAAISNVL PATTHRLCML EMLGRMPEKV EPSLRNNPLF 660 QTRMNECVLG SETVVEFESK WESIISDFGL QGNQWLAERY STRERWILAY STDVHLSGIL 720 RSTAWSKSAK SFFNCFINQK LSLVEFWLRF EAALECQRQE ESNADHTSAY TTPQLITPWG 780 LEKHGSVVFT HEVFERFQEE IVAARDHCVV EDMAQNEGVK TVAIGGDDSD KVREVRWDAV 840 AMTANCSCKL FESVGIPCRH INLVLRSSEL NELPSSCVLK RWQKSAKFG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161160.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A446MGG2 | 0.0 | A0A446MGG2_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_2ECC216F7.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-99 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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