PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BL_2784BC27C.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 938aa MW: 102113 Da PI: 6.0592

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_2784BC27C.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.4	5.9e-28	562	613	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i +++l+kyFs+++kdAAk+Lgvc+T+LKriCR +GI+RWP+Rki+++ Traes_2BL_2784BC27C.2 562 AEKNIGMDVLRKYFSGSLKDAAKSLGVCPTTLKRICRTHGISRWPSRKINKV 613 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.597	547	633	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-25	565	613	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.29E-23	831	919	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.1E-23	833	915	No hit	No description
PROSITE profile	PS51745	21.872	836	918	IPR000270	PB1 domain
SMART	SM00666	2.6E-17	836	918	IPR000270	PB1 domain
Pfam	PF00564	9.0E-16	837	917	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MDVPMPSQSN RAGCNGSVGS PSDDPYGVTA MMNFDGYSEL CGSPSLADQL FSLLNDSSTH 60 QMFAMWSSLG SSPRASGVSE DMQLDAYSSV PGDQKVDLVS SVNPAETGTG RMAKSSGDLG 120 SDGDPEQGST SLVPRPIAGN LLADRMLMAL SLFRKSLGGG VLAQVWMPVE QEGHVVLSTC 180 EQPFLLDQAL AGYREVSRHF VFSAKEETGL QPGLPGRVFI SGVPEWTSNV LYYSKPEYLR 240 MEYALHHDVR GSLAMPIYDP SKGSCCAVLE LITKKEKPDF AAEMDNLRHA LQAVNLETAK 300 DCIDQKVYSA NQKAAFTEIL DVLRAICHAH MLPLALTWVP SSNGSDGGYV GHDSVLDSQS 360 GKTILRIHES ACYVNDAKMQ GFFHACTETH LEKGQGIAGR ALKSNLPFFS PNIREYGIKD 420 YPLAHHARKF GLHAAVAIRL RSTYTGDDDY ILEFFLPINC TGSEEQQMLL NNLSSTMQRI 480 CKSLRTVSEA EVDKVDACTA VMYKATSGSC LPTGQSESSS RGDQPATEEA FQDLSLIDKQ 540 RGMSEQAQSS TMRLAEKKRS TAEKNIGMDV LRKYFSGSLK DAAKSLGVCP TTLKRICRTH 600 GISRWPSRKI NKVNRSLKKI QTVINSVHGV DSSLQYDPAT GSLVPAVSLP EKTSFPSCDA 660 VSSPSVGKTV DEKSGPKSEQ GYSSPEGWER ESCQLQRPDA QKGEGDEFHM QTSNYSGSGD 720 HASYGANVTH HINSEGTQEP LYPIGAVSAL HDKETGCIEP SARVLPSIKT TRDQIVGRNS 780 PPAQQADIDM FDDREGREHT HPSTSGMTDS SSGSASSHPT FKKNPARPLK DKSSPALTVK 840 ATYNGDTVRF KFLPSMGWYN LLEEIAKRFK LSMGVFQLKY KDDEDEWVIM ANDSDLQECV 900 DVMDSMGTRN VKLQVRDLPC LISSSGSSSC LQLEGHNS

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MDVPMPSQSN RAGCNGSVGS PSDDPYGVTA MMNFDGYSEL CGSPSLADQL FSLLNDSSTH  60
QMFAMWSSLG SSPRASGVSE DMQLDAYSSV PGDQKVDLVS SVNPAETGTG RMAKSSGDLG  120
SDGDPEQGST SLVPRPIAGN LLADRMLMAL SLFRKSLGGG VLAQVWMPVE QEGHVVLSTC  180
EQPFLLDQAL AGYREVSRHF VFSAKEETGL QPGLPGRVFI SGVPEWTSNV LYYSKPEYLR  240
MEYALHHDVR GSLAMPIYDP SKGSCCAVLE LITKKEKPDF AAEMDNLRHA LQAVNLETAK  300
DCIDQKVYSA NQKAAFTEIL DVLRAICHAH MLPLALTWVP SSNGSDGGYV GHDSVLDSQS  360
GKTILRIHES ACYVNDAKMQ GFFHACTETH LEKGQGIAGR ALKSNLPFFS PNIREYGIKD  420
YPLAHHARKF GLHAAVAIRL RSTYTGDDDY ILEFFLPINC TGSEEQQMLL NNLSSTMQRI  480
CKSLRTVSEA EVDKVDACTA VMYKATSGSC LPTGQSESSS RGDQPATEEA FQDLSLIDKQ  540
RGMSEQAQSS TMRLAEKKRS TAEKNIGMDV LRKYFSGSLK DAAKSLGVCP TTLKRICRTH  600
GISRWPSRKI NKVNRSLKKI QTVINSVHGV DSSLQYDPAT GSLVPAVSLP EKTSFPSCDA  660
VSSPSVGKTV DEKSGPKSEQ GYSSPEGWER ESCQLQRPDA QKGEGDEFHM QTSNYSGSGD  720
HASYGANVTH HINSEGTQEP LYPIGAVSAL HDKETGCIEP SARVLPSIKT TRDQIVGRNS  780
PPAQQADIDM FDDREGREHT HPSTSGMTDS SSGSASSHPT FKKNPARPLK DKSSPALTVK  840
ATYNGDTVRF KFLPSMGWYN LLEEIAKRFK LSMGVFQLKY KDDEDEWVIM ANDSDLQECV  900
DVMDSMGTRN VKLQVRDLPC LISSSGSSSC LQLEGHNS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150529.1	0.0	protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A3B6C941	0.0	A0A3B6C941_WHEAT; Uncharacterized protein
STRING	Traes_2BL_2784BC27C.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]