PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_264CE0C2E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 8242.74 Da PI: 3.7578 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 22 | 67 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 WT e ++ + +a + + W++Ia + g+t+++++ ++ Traes_2BL_264CE0C2E.1 22 GWTREQEKAFENALATVDEEegeaMWDKIADAVE-GKTPEEVRRHYE 67 6*****************99**************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.679 | 15 | 70 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0012 | 19 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-6 | 21 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 22 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.48E-11 | 22 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.46E-5 | 23 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MAAEEASSSG GGGGEEGSGA GGWTREQEKA FENALATVDE EEGEAMWDKI ADAVEGKTPE 60 EVRRHYELLV EDVDGIEA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366932 | 3e-89 | AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09. | |||
GenBank | AK372619 | 3e-89 | AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192024.1 | 2e-31 | transcription factor SRM1-like | ||||
Swissprot | F4JVB8 | 8e-15 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A3B6CIP8 | 3e-44 | A0A3B6CIP8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MX40 | 3e-44 | A0A446MX40_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_264CE0C2E.1 | 1e-46 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-16 | RAD-like 1 |
Publications ? help Back to Top | |||
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