PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_260DF778A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 288aa    MW: 31863 Da    PI: 7.1091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_260DF778A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-50121411128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            lppGfrFhP+d+elv +yL++k++g   ++  v + +vd++k+ePw+Lp ++  + kewyfFs++d+kyatg+r+nrat++gyWkatg
  Traes_2BL_260DF778A.1  12 LPPGFRFHPRDHELVLDYLCHKLSGGGGRAGGVdMVDVDLNKCEPWELPDAACVGGKEWYFFSRHDRKYATGQRTNRATHTGYWKATG 99 
                            79*************************8887888***************7666789******************************** PP

                    NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            kd+ ++     ++vg++ktLvfy grap+g+kt+Wvmhe+r+
  Traes_2BL_260DF778A.1 100 KDRVITGDgAAAVVGMRKTLVFYLGRAPRGTKTEWVMHEFRA 141
                            ******9755667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-573175IPR003441NAC domain
PROSITE profilePS5100553.58912175IPR003441NAC domain
PfamPF023651.0E-2513140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSSSMSMVEA RLPPGFRFHP RDHELVLDYL CHKLSGGGGR AGGVDMVDVD LNKCEPWELP  60
DAACVGGKEW YFFSRHDRKY ATGQRTNRAT HTGYWKATGK DRVITGDGAA AVVGMRKTLV  120
FYLGRAPRGT KTEWVMHEFR AEGRPPARRQ LADHPHGSPP FLLEEDWVLC RVFYKSTTAA  180
PTPASDESSG SQSSEVGMAP ALLPIAPIDA VGRMPMAAIT DSFRGHQEYS TSLLMAPQHW  240
PVAPLPFRSF RDLLGDMVES SSGDPKPEWS VDDGYTRHSG MPQAWNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-50717915172NAC domain-containing protein 19
3swm_B7e-50717915172NAC domain-containing protein 19
3swm_C7e-50717915172NAC domain-containing protein 19
3swm_D7e-50717915172NAC domain-containing protein 19
3swp_A7e-50717915172NAC domain-containing protein 19
3swp_B7e-50717915172NAC domain-containing protein 19
3swp_C7e-50717915172NAC domain-containing protein 19
3swp_D7e-50717915172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3704950.0AK370495.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152869.11e-161NAC domain-containing protein 21/22-like
SwissprotQ84TE67e-71NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A3B6CCZ70.0A0A3B6CCZ7_WHEAT; Uncharacterized protein
STRINGTraes_2BL_260DF778A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-68NAC domain containing protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  6. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  7. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]