PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_24E6E8DF9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 339aa MW: 38643.5 Da PI: 6.989 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.9 | 2.3e-54 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPtdeelv++yL+kkv+ k+++l ++ik+vd+yk+ePwdL++ k+ + ++++w+fFs++dkky+tg+r+nrat++g+Wka Traes_2BL_24E6E8DF9.1 7 VPPGFRFHPTDEELVDYYLRKKVQLKRIDL-DIIKDVDLYKIEPWDLQErcKIGTeDQNDWFFFSHKDKKYPTGTRTNRATTAGFWKA 93 69****************************.99**************953444442455***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tg+dk++++ k+ lvg++ktLvfykgrap+g+k dW+mheyrle Traes_2BL_24E6E8DF9.1 94 TGRDKPIYV-KHCLVGMRKTLVFYKGRAPNGQKLDWIMHEYRLE 136 *********.899*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-59 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.586 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MNVFSHVPPG FRFHPTDEEL VDYYLRKKVQ LKRIDLDIIK DVDLYKIEPW DLQERCKIGT 60 EDQNDWFFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKHCLVGMR KTLVFYKGRA 120 PNGQKLDWIM HEYRLETNEN GAPHDEGWVV CKVFKKRVAT VQRMATVDSP FWFNHDHAAF 180 MAPHVDSPRQ AVHHLQNAAY HHGHHQTYHH PCKVELEYHQ LLPQEPASFL QLPQLEMPGL 240 PGLIGAVAAS LQPCNQTHDG QASRQLEIEP VYVTDASAGE WRDLDKFMAS QLSHDGSTPK 300 ESSGYANPAV AFQAEGKHEE ALDYVSASAS SGGDNGLWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-48 | 6 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ693423 | 0.0 | JQ693423.1 Brachypodium distachyon SWN2 (SWN2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167162.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Refseq | XP_020167163.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Refseq | XP_020167164.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Refseq | XP_020167165.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Refseq | XP_020167167.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-118 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A3B6CAC8 | 0.0 | A0A3B6CAC8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MJG3 | 0.0 | A0A446MJG3_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_24E6E8DF9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2370 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-110 | NAC 007 |
Publications ? help Back to Top | |||
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