PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_1F5DBD5D5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 775aa    MW: 83454.3 Da    PI: 5.8451
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_1F5DBD5D5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20114170157
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                            +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Traes_2BL_1F5DBD5D5.1 114 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 170
                            688999************************************************995 PP
2START186.91e-582915101206
                            HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                  START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla 77 
                            ela +a++el+++a +++p+W + +     ++++e+ + f + ++          +ea+r+ +vv+m++a lve+l+d++ q+   + 
  Traes_2BL_1F5DBD5D5.1 291 ELAVAAMEELLRMARLDDPLWATTVdqaLALDEEEYARMFIDPRGslgpkqygLVSEASRDAAVVIMTPASLVEILMDVN-QYAAVFS 377
                            57899********************8776688889988887766689*********************************.6666665 PP

                            ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS
                  START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154
                                +a+tlev+s+g      galq+m+ e+q++splvp R+++fvRy+++  +g w++vdvS+d  q +       +++++pSg+li
  Traes_2BL_1F5DBD5D5.1 378 sivsRAATLEVLSTGvagcydGALQVMSVEFQVPSPLVPtRESYFVRYCKRNADGAWAVVDVSLDGLQGV-------KCRRRPSGCLI 458
                            5555*************************************************************99985.......699******** PP

                            EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                            ++ +ng+skvtwvehv++++r++h+++++lv+sgla+ga++wv  l+rqce+
  Traes_2BL_1F5DBD5D5.1 459 QEAPNGYSKVTWVEHVEVDDRSVHNIYKPLVGSGLAFGARRWVGVLGRQCER 510
                            **************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-22100169IPR009057Homeodomain-like
SuperFamilySSF466891.0E-19104171IPR009057Homeodomain-like
PROSITE profilePS5007117.07111171IPR001356Homeobox domain
SMARTSM003892.3E-20112175IPR001356Homeobox domain
CDDcd000861.32E-19113172No hitNo description
PfamPF000466.3E-18114169IPR001356Homeobox domain
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PROSITE profilePS5084837.468282513IPR002913START domain
CDDcd088752.74E-108288509No hitNo description
SuperFamilySSF559611.34E-31289512No hitNo description
SMARTSM002346.7E-51291510IPR002913START domain
PfamPF018524.1E-50292510IPR002913START domain
Gene3DG3DSA:3.30.530.204.0E-4353476IPR023393START-like domain
SuperFamilySSF559618.55E-24531762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MMIPARHMPS SMIGRSSGGA PYGSSSALSL GQPNLLDGSN QHLLPHHLLE QIPARAAESG  60
DNNGSGGGVG MIRGRDSMDP LGDEFESRSG SENVDGDAVD NAEQDQDPNQ RPRKKRYHRH  120
TQHQIQEMEA FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKN QHERHENSQL  180
RADNDKLRAE NMRYKEALSS ASCPNCGGPA ALGEMSFDEH HLRVENARLR DEIDRISAIA  240
AKYVGKPMVP FPVLSSPLAA APGASAYDVF AGAASVLQAP PDDKQQGVVV ELAVAAMEEL  300
LRMARLDDPL WATTVDQALA LDEEEYARMF IDPRGSLGPK QYGLVSEASR DAAVVIMTPA  360
SLVEILMDVN QYAAVFSSIV SRAATLEVLS TGVAGCYDGA LQVMSVEFQV PSPLVPTRES  420
YFVRYCKRNA DGAWAVVDVS LDGLQGVKCR RRPSGCLIQE APNGYSKVTW VEHVEVDDRS  480
VHNIYKPLVG SGLAFGARRW VGVLGRQCER LASAMASNIP TSDIGVITSS EGRKSMLKLA  540
ERMVASFCGG VTASVAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN AATSFWLPVP  600
PKRVFDFLRD ETSRSEWDIL SNGGIVQEMA HIANGRDHGN CVSLLRVNST NSNQSNMLIL  660
QESCTDASGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPAG TMHAAAGATG  720
TGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER IKTAVISNGR ASPPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619710.0AK361971.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199198.10.0homeobox-leucine zipper protein ROC2-like
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A3B6CDE50.0A0A3B6CDE5_WHEAT; Uncharacterized protein
STRINGTraes_2BL_1F5DBD5D5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]