PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_1EBB348CB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 336aa    MW: 35271.7 Da    PI: 6.806
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_1EBB348CB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-12172215447
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  Traes_2BL_1EBB348CB.1 172 WTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 215
                            *****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.04859112IPR001005SANT/Myb domain
PROSITE profilePS500905.55261110IPR017877Myb-like domain
SuperFamilySSF466892.94E-862117IPR009057Homeodomain-like
CDDcd001673.58E-563110No hitNo description
PROSITE profilePS5129416.776164220IPR017930Myb domain
SuperFamilySSF466894.26E-16167221IPR009057Homeodomain-like
SMARTSM007173.0E-10168218IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.0E-17168218IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-10171214IPR009057Homeodomain-like
CDDcd001675.21E-10172216No hitNo description
PfamPF002498.3E-11172215IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSAMVTEEGS GFGSGGWMCE QDMVFESTLA LVDLEEGEAV WNNMAGVVEV KKGSGSGSGP  60
GGWTWEQNKA FENALALVDL GEGEAVWNKI ADAVLGKTAE EIKRHYELLV ADVDAIEAGR  120
VPLPVYTDGG SPEEGGSGGK KGGGRVRGGR GGHGPKGSSK SVEHEGRKGI LWTEDEHRLF  180
LLGLEKYGKG DWRSISRNFV ISRTPTQVAS HAQKYFIRLN SMNRERRRSS IHDITSVNGE  240
ASAAQGPITG TNGQAAVPGK SPKQSPHQPG NLPPGVDAFG TTIGQPVGGP LVSAVGTPVT  300
LPVAAPPHMG YAMHAPVPGT VVPRAPMYPM PPPPSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1453131279RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143GGKKGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669320.0AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09.
GenBankAK3726190.0AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192024.11e-142transcription factor SRM1-like
SwissprotQ9FNN62e-86SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A446MWI30.0A0A446MWI3_TRITD; Uncharacterized protein
STRINGTraes_2BL_1EBB348CB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-82MYB family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]