PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_1AED96909.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 654aa    MW: 72581.7 Da    PI: 6.0233
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_1AED96909.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23124225199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g  W +++i+r++++r++lt+GW+ Fv++++L +gD ++F
  Traes_2BL_1AED96909.1 124 FCKTLTASDTSTHGGFSVLRRHAEEClppldmSQNPPC-QELVAKDLHGTDWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIF 210
                            99*****************************7556666.59*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++el+v+v+r+
  Traes_2BL_1AED96909.1 211 L--RGENGELRVGVRRH 225
                            *..449999******96 PP
2Auxin_resp100.22.9e-33250335183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvs...dldpvrWpnSkWrsLk 83 
                            a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe++++ err+sGt++g+    +++++ W +S W+sLk
  Traes_2BL_1AED96909.1 250 ASHAISTGTLFSVFYKPRTSQSEFVVSVNKYLEAKKQNISVGMRFKMKFEGDEALERRFSGTIIGIGstpTMSTSPWADSDWKSLK 335
                            789*************************************************************997222578889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-45111253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-41122239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-21122224No hitNo description
PROSITE profilePS5086311.617124226IPR003340B3 DNA binding domain
SMARTSM010194.0E-21124226IPR003340B3 DNA binding domain
PfamPF023622.8E-21124225IPR003340B3 DNA binding domain
PfamPF065071.5E-31250335IPR010525Auxin response factor
PROSITE profilePS5174523.846532625IPR000270PB1 domain
SuperFamilySSF542771.83E-10535611No hitNo description
PfamPF023095.3E-8579623IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAMANPSAAG APGICSDALF RELWHACAGP LITVPRQGER VYYFPQGHME QLEASTNQQL  60
DQYLPMFNLP SKILCSVVNV ELRTEADSDE VYAQIMLQPE ANQGELTSLG PEPQELEKGT  120
IHSFCKTLTA SDTSTHGGFS VLRRHAEECL PPLDMSQNPP CQELVAKDLH GTDWHFRHIF  180
RGQPRRHLLT TGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRHMRQVN NMPSSVISSH  240
SMHLGVLATA SHAISTGTLF SVFYKPRTSQ SEFVVSVNKY LEAKKQNISV GMRFKMKFEG  300
DEALERRFSG TIIGIGSTPT MSTSPWADSD WKSLKVQWDE PSSILRPDRV SPWELEPLDA  360
ANPQPPQPPL RNKRPRLPAS SSVVPELAPK FGLWKSPAEP SQTLSFSEPQ QARGLFTNSR  420
FSSSSNVAFN QFYWPARESR EDSYAGSTNK VTVERKLEPT AGGCRLFGIE IRSAVEETQP  480
VLTVSGDGYD QTAASVDVDS GELSQPSNIN NSGAQAASSE RALLETQSRQ VRSCTKVIMT  540
GMAVGRAVDL TKLYGYVDLH RKLEEMFDIQ GELCSTLKKW QVVYADEEDD MMLVGDDPWD  600
EFCSMAKRIY IYTYEEAKQL APKATKLSRV NSSHESVTPQ SGSEYPASFA NADC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013601357Auxin response factor 1
4ldw_A0.013601357Auxin response factor 1
4ldw_B0.013601357Auxin response factor 1
4ldx_A0.013601357Auxin response factor 1
4ldx_B0.013601357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516660.0AK251666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf119n03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162394.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A3B6C7Q60.0A0A3B6C7Q6_WHEAT; Auxin response factor
TrEMBLA0A446MDT70.0A0A446MDT7_TRITD; Auxin response factor
STRINGTraes_2BL_1AED96909.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]