PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_0B80B3876.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 745aa    MW: 81170.2 Da    PI: 6.483
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_0B80B3876.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.91e-3192176187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+++e+laLi++r+em++++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  Traes_2BL_0B80B3876.2  92 RWPREETLALIRIRSEMDTTFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFQELEA 176
                            8*********************************************************************866665..******985 PP
2trihelix109.71.9e-34495580187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k ev+aLi++r +m++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea
  Traes_2BL_0B80B3876.2 495 RWPKTEVHALIQLRMDMDNRYQENGPKGPLWEEISAGMRRLGYSRNSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 580
                            8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.0E-589151IPR001005SANT/Myb domain
CDDcd122033.88E-3191156No hitNo description
PROSITE profilePS500907.15591149IPR017877Myb-like domain
PfamPF138371.5E-2291177No hitNo description
SMARTSM007170.018492554IPR001005SANT/Myb domain
PROSITE profilePS500907.062494552IPR017877Myb-like domain
PfamPF138373.8E-22494581No hitNo description
CDDcd122037.19E-30495559No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MQQQHQHHHQ GGGSQYGAPP PADMGPFSAQ PAPGPVPLSV RPPPTQQQQP QPSYEQELAA  60
ASGAGGSSFP DDDMLGDSGG HSAGGLGSGG NRWPREETLA LIRIRSEMDT TFRDATLKGP  120
LWEEVSRKLA ELGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF FQELEALHAA  180
TAAAQHQQQE HLPLVVSAAP PPQMHAFSAP QPMSAMPPPP GPMQPAPISS AAPAPVVEPP  240
HPLPVSLQGL SFPSMSDSES DDDDDSEDDD MTAETGGSPD GLGKRKRGGG GSKKMMAFFE  300
GLMKQVVQRQ EEMQQRFLET MEKREAERTE REEAWRRQEV ARLNREQEQL AQERAAAASR  360
DASIIAFLQR IGGQTVHVPP VVIPMPTPMQ VQTPPPPKKP RQHLPPPPPS QATQQPQPQP  420
QPQPIPAAPL QQQPPPQPPQ HKETTREEAG TPRSAPAPTS AGLSLALVPV ATEQHVVEAA  480
GLGGGESGGG PSSSRWPKTE VHALIQLRMD MDNRYQENGP KGPLWEEISA GMRRLGYSRN  540
SKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLEA IYRKKHNGSG SSGAAANNAV  600
VSVPAVAEHQ NLNRHEIEIE GKKINDTDKR NNGGVGAAQV PTSNGQTTPT TATFDLGVKK  660
PEDAVRELNE QPHREFTTDE TDSDDMGDDY TDDGEDGEDD GKMQYRIQFQ RPNPVGTNNA  720
PPPPTTAATA APTSTPASSF LAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589110.0AK358911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085J16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200393.10.0trihelix transcription factor GTL1-like isoform X1
SwissprotQ391171e-71TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3B6CAF60.0A0A3B6CAF6_WHEAT; Uncharacterized protein
TrEMBLA0A446MJQ70.0A0A446MJQ7_TRITD; Uncharacterized protein
STRINGTraes_2BL_0B80B3876.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-48Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]