PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_070D9E2AD.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 208aa    MW: 22878.5 Da    PI: 8.8449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_070D9E2AD.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-121157455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           ++ ++Er RR+r+N+++ +Lr ++P+      +K++Ka+i + A+ YI  Lq
  Traes_2BL_070D9E2AD.2 11 KNIIMERDRRRRLNEKLYNLRGVVPNI-----TKMDKASIIQDAIAYIEALQ 57
                           56689*********************7.....7*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-17774IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-11861No hitNo description
PfamPF000106.3E-101157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-151272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-141362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAMTRATRAS KNIIMERDRR RRLNEKLYNL RGVVPNITKM DKASIIQDAI AYIEALQEQE  60
RQLLAEISDL EPDNCTAAVK AENVASVGSQ VEEEGVGLPR RKKMRRTSSA SSINDAITSP  120
ATYAVEILEL EVTNVAEKLS VVSLRHGKPR DAMVKVCGAL QSLCLKVITA SVTTVAGSMV  180
HTMFVETEGV DGAQTIKEMI KFALHHLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3598501e-140AK359850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1104J03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176410.11e-141transcription factor bHLH35-like isoform X2
TrEMBLA0A3B6C8K21e-150A0A3B6C8K2_WHEAT; Uncharacterized protein
STRINGTraes_2BL_070D9E2AD.21e-151(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.23e-43bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]