PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_02479C76A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 145aa MW: 16788.9 Da PI: 9.5664 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1e-17 | 3 | 45 | 14 | 56 |
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k Traes_2BL_02479C76A.1 3 VLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTK 45 7****************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114.3 | 7.5e-37 | 2 | 80 | 12 | 91 |
HD-ZIP_I/II 12 klLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ++LE+sF+e+ +L+p++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Traes_2BL_02479C76A.1 2 AVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 80 68**************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.597 | 1 | 47 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-7 | 1 | 51 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-15 | 2 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.77E-11 | 2 | 48 | No hit | No description |
Pfam | PF00046 | 4.9E-15 | 3 | 45 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-16 | 3 | 45 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.1E-6 | 18 | 27 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 22 | 45 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.1E-6 | 27 | 43 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.8E-12 | 47 | 81 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.4E-24 | 47 | 90 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
SAVLEDSFRE HPTLNPRQKA ALAQQLGLRS RQVEVWFQNR RARTKLKQTE VDCEFLKRCC 60 ETLTEENRRL QKEVQELRAL KLVSPHQYMH MSPPTTLTMC PSCERVSNNN NNNNNNNNNN 120 NTADRRNGVE GAICHRPIAV RPQHS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 47 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974980 | 1e-136 | EU974980.1 Zea mays clone 462177 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds. | |||
GenBank | KJ728362 | 1e-136 | KJ728362.1 Zea mays clone pUT6644 HB transcription factor (HB53) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164579.1 | 8e-86 | homeobox-leucine zipper protein HOX17-like | ||||
Swissprot | Q0JB92 | 8e-76 | HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17 | ||||
TrEMBL | A0A3B6CBD3 | 1e-102 | A0A3B6CBD3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_02479C76A.1 | 1e-103 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 1e-61 | homeobox protein 2 |
Publications ? help Back to Top | |||
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