PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_FE9AC4EDD.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28654.7 Da PI: 6.5232 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.3e-08 | 101 | 148 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +l + + +K +K +iL A++ + +L Traes_2AS_FE9AC4EDD.2 101 SKACREKVRRDKLNERFLELGAVLDPG---KTPKIDKCAILNDAIRAVTEL 148 6789**********************9...9**************977665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.941 | 97 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.36E-6 | 100 | 153 | No hit | No description |
SuperFamily | SSF47459 | 9.55E-13 | 101 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-6 | 101 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-13 | 101 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-7 | 103 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00351 | 163 | 195 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MASPEGSNWV FDCPLMDDLA AADFAAASTG GFYWTPPMQP QMHTLAQAVS ATPAPNPWYV 60 IAVSPLLSAE INSSVSVDWD HAKGQPKNKR PRSETGAQPS SKACREKVRR DKLNERFLEL 120 GAVLDPGKTP KIDKCAILND AIRAVTELRS EAEKLKDSND SLQEKIRELK AEKNELRDEK 180 QKLKAEKESL EQQIKFMNAR QSLVPHPSVI PAAAFAAAQG QAAGHKLMMP VMSYPGFPMW 240 QFMPPSDVDT SDDPKSCPPV A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370016 | 0.0 | AK370016.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2103J11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159705.1 | 1e-159 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 5e-76 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A446KVJ7 | 0.0 | A0A446KVJ7_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AS_FE9AC4EDD.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-68 | bHLH family protein |