PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_E17243D52.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 211aa MW: 22766.1 Da PI: 9.3436 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 29.1 | 1.2e-09 | 170 | 211 | 2 | 43 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaa 43 ++lL++cA+a++++d++l+q++L+ l+++a dgd++qRl+a Traes_2AS_E17243D52.1 170 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTA 211 79*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 8.979 | 143 | 211 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-7 | 170 | 211 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
NIPCTYVLDE SIKLSPFSVS LGFPFDTRSQ SSIGIGKARV CSCRLYLRFG RASARPSIYA 60 LYKHQIRSSN CWTCTSSASL LFSNHRRSAA NLLPSIPPTS RPPYMMQFTH AAVTAPPLYP 120 NGHHGLGLGL FLDVGAPRAR PWPAAGSLFP TLPPSSKISL GNLNSAGCME QLLVHCANAI 180 EANDATLTQQ ILWVLNNIAP ADGDSNQRLT A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362740 | 0.0 | AK362740.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165039.1 | 4e-70 | scarecrow-like protein 32 | ||||
TrEMBL | A0A3B6C330 | 3e-71 | A0A3B6C330_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446M2X2 | 3e-71 | A0A446M2X2_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AS_E17243D52.1 | 1e-153 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5697 | 37 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 2e-18 | GRAS family protein |
Publications ? help Back to Top | |||
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