PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_CD74215DB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 348aa    MW: 37864.4 Da    PI: 8.3946
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_CD74215DB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.9e-151462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l++   ++G+g +W + +++ g++R++k+c++rw++yl
  Traes_2AS_CD74215DB.1 14 KGPWSPEEDAKLKEFMDKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding34.93.6e-1169111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +T+ Ed  +    +  G++ W+ Ia+ ++ gRt++++k++w++
  Traes_2AS_CD74215DB.1  69 GEFTEHEDRVICSMYASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                            78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.066966IPR017930Myb domain
SuperFamilySSF466891.09E-2611109IPR009057Homeodomain-like
SMARTSM007174.8E-111364IPR001005SANT/Myb domain
PfamPF002492.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-231569IPR009057Homeodomain-like
CDDcd001672.47E-81662No hitNo description
PROSITE profilePS5129415.81867117IPR017930Myb domain
SMARTSM007175.8E-1167115IPR001005SANT/Myb domain
PfamPF002493.0E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2270117IPR009057Homeodomain-like
CDDcd001671.03E-770113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFMD KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FTEHEDRVIC SMYASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLMGS  120
TTMAGAGPPP RAPRQNHHQH RPVLLPYSSS PHSNYSNFFH GAGALLQQSA EPLTLQPQDH  180
YMLGSSGSLN PMGNSNGASA VQLQLLHATT AHRQLQVKEE CGSGGAMIAF GCGDQQSCSS  240
SDGTQYGGGQ YVHGGRHHGK EMSFDNNNGY SAYGVYGNGA GAVEQEHKLS FQLQHQQEQQ  300
QAQLDYSYEE IKQLLMTAAA SGADGLIHDS ELIGAHAAAA AAGKLTMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686600.0AK368660.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077K09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168809.10.0transcription factor RAX2-like
TrEMBLA0A3B6AS180.0A0A3B6AS18_WHEAT; Uncharacterized protein
STRINGTraes_2AS_CD74215DB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]