PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AS_CA4D79100.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRF

Protein Properties

Length: 267aa MW: 28561.7 Da PI: 4.4585

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AS_CA4D79100.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71.2	1.2e-22	178	218	1	41
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + Traes_2AS_CA4D79100.1 178 EPEPGRCRRTDGKKWRCWRKTIPNEKYCERHMHRGRKRPVQ 218 69***********************************9765 PP
2	QLQ	54.1	4.6e-19	112	147	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k Traes_2AS_CA4D79100.1 112 SFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 147 8*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.7E-8	111	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.3E-12	112	146	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.018	112	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.126	178	222	IPR014977	WRC domain
Pfam	PF08879	1.2E-18	179	216	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MAAEGEDKKD ANSVGGGGGG GENTLXXXXA EEAILQAVGQ EPGQELEGEV EESADREGNG 60 DDAGKEDSGC KDLVLVEDPV LVEDPEEAVA TAALQEEMRA LFASVPEGAG ASFTAMQLQE 120 LEQQSRVYQY MAARVPVPTH LVFPIWKSVT GASSEGAQNY PTLMGLATLC LDFGKSPEPE 180 PGRCRRTDGK KWRCWRKTIP NEKYCERHMH RGRKRPVQVI VEDDEPDSAS GSKSSSGKVT 240 EGGKKTDDKS SSSKKLAVAA PAAVEFT

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249458	0.0	AK249458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf29g18, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153628.1	1e-171	growth-regulating factor 11-like
Swissprot	A5HEG9	1e-134	GRF10_MAIZE; GRF-interacting factor 10
TrEMBL	A0A1D5UD70	1e-176	A0A1D5UD70_WHEAT; Growth regulating factor 8-B1
TrEMBL	A0A446M7A7	1e-176	A0A446M7A7_TRITD; Uncharacterized protein
STRING	Traes_2AS_CA4D79100.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-30	growth-regulating factor 5

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]