PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_C73DE621D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 357aa    MW: 40296.5 Da    PI: 7.861
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_C73DE621D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.6e-52131411128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            l pGfrFhPtdeelv++yLkkk+++k++++ e i++ diyk++PwdLpk + +++e+ewyf+++rd+ky++++r+nr+t++g+Wkatg
  Traes_2AS_C73DE621D.1  13 LLPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQQDIYKFDPWDLPKlASTSSETEWYFYCPRDRKYRKSTRPNRVTATGFWKATG 99 
                            579***************************.89***************535556788******************************* PP

                    NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +d++++s+ +++ vglkk+Lvfykgra +g ktdW+mhe+rl
  Traes_2AS_C73DE621D.1 100 TDRPIYSSeGTRCVGLKKSLVFYKGRAARGIKTDWMMHEFRL 141
                            *******856667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-5612172IPR003441NAC domain
PROSITE profilePS5100556.59613172IPR003441NAC domain
PfamPF023651.2E-2515141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEGRDDVKSD EILLPGFRFH PTDEELVSFY LKKKIQQKPI SIELIRQQDI YKFDPWDLPK  60
LASTSSETEW YFYCPRDRKY RKSTRPNRVT ATGFWKATGT DRPIYSSEGT RCVGLKKSLV  120
FYKGRAARGI KTDWMMHEFR LPSLTDPSLP KRPIDKNIPL NDSWTICRIF KKTSSMAAQR  180
ALSHAWGATL PGAPEEQHLL SAMQPVQASH FASESSTSSL QVAAVAPSNH FISFNCGPSQ  240
QVLKGPIILP FQTQAPSGKT MRTVPPPLFF DAHFGQPEQI AGFVTGSSVD VNSSMSCRDQ  300
ESSTTKRGGN FRNNEWEAPE RLDFPFGLVE DSSDDWECNI PWESFLSPTV PAEIPQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-491317517168NO APICAL MERISTEM PROTEIN
1ut4_B7e-491317517168NO APICAL MERISTEM PROTEIN
1ut7_A7e-491317517168NO APICAL MERISTEM PROTEIN
1ut7_B7e-491317517168NO APICAL MERISTEM PROTEIN
4dul_A7e-491317517168NAC domain-containing protein 19
4dul_B7e-491317517168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190499.10.0protein FEZ-like
SwissprotQ9ZVH03e-91FEZ_ARATH; Protein FEZ
TrEMBLW5C9820.0W5C982_WHEAT; Uncharacterized protein
STRINGTraes_2AS_C73DE621D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.16e-92NAC family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]