PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_C4FD8E351.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 790aa    MW: 87795.6 Da    PI: 7.7567
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_C4FD8E351.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18287386198
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v F++
  Traes_2AS_C4FD8E351.2 287 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDTVSFSR 373
                            89**************************555566778***************9989999999***9.********************9 PP

                            -SSSEE..EEEEE- CS
                     B3  85 dgrsefelvvkvfr 98 
                            ++  e++lv+++++
  Traes_2AS_C4FD8E351.2 374 ID-PEGKLVMGFRK 386
                            87.67767777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-31283393IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-21284390IPR015300DNA-binding pseudobarrel domain
CDDcd100173.13E-23285386No hitNo description
PROSITE profilePS5086311.265287388IPR003340B3 DNA binding domain
PfamPF023622.0E-15287386IPR003340B3 DNA binding domain
SMARTSM010199.3E-22287387IPR003340B3 DNA binding domain
PROSITE profilePS5105014.128543593IPR011124Zinc finger, CW-type
PfamPF074968.6E-11548590IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MAPSQMWSTP TVHMPQNVAD RKDSYVKSWR PPTGQISSQW RQNHQLWNMS TIQSDLQQRL  60
AYEFDRPSGS EKLPPGRTFI HAQEKKSDDM HDRPTTPAGM GQIIRDRYAN GLGQQTSMDP  120
THSSTPYQRE GPNPNSLHDP SHHVGESDPL SSRKGIISDG GSTVSTGFKL DSHHPSILKD  180
DAASTLPTMG GYTITNYPPV PGRSDHLRII PNNPQQPPTT VPLSVVQKQF YSHSVIEPNY  240
QAQFRNGKPR MDPKARSELL PRYWPRITDK ELQHLSGDSN SVITPLFEKM LSASDAGRIG  300
RLVLPKKCAE AYFPPISQPE GLPLKVQDAS GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS  360
MHLQAGDTVS FSRIDPEGKL VMGFRKTKTQ EQIFRQEEPT KPANAAPNLP DVNVNVSAPD  420
SSPNSSLARP NKVNTENKDS SPVEQAASKI DKGGVAQKEG PGTVRTSPGP VKRKATSIGP  480
KIKRFRIDNE ESMELKITWE EAQELLRPPL KAPSVVIVDG HEFEEYEEPP VLGRKTYFVT  540
DQSGENHQWA QCEDCSKWRK LPVDALLPSK WTCSDNKWDP ERTTCVSPQE ASMEELAELI  600
PIKAGAAKKA KLRMDTDSID VSDGLDTLAN LAILGEGESL PSQPTTKHPR HRPGCSCIVC  660
IQPPSGKGPK HKQTCTCNVC MTVRRRFRTL MLRREKRASE KESEEPPRKK EQGQSSESPQ  720
DPLPASTSPT STPQKVNGNG DDAEEAVEHS MASSPMKNQI DLNIQPERED EQSPKSDAVG  780
AMRLARENAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-642653872124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159271.10.0B3 domain-containing protein Os07g0563300-like isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A3B6AWH70.0A0A3B6AWH7_WHEAT; Uncharacterized protein
STRINGTraes_2AS_C4FD8E351.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-144HSI2-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]